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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4c3iA_

Fold library idPDB HeaderMoleculeTitle
c4c3iA_PDB header: transferaseChain: A: PDB Molecule: dna-directed rna polymerase i subunit rpa190;PDBTitle: structure of 14-subunit rna polymerase i at 3.0 a resolution,2 crystal form c2-100


Added to library: Sat Oct 26 08:44:54 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNLCSTCGLDEK
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Known secondary structure (DSSP)

TTS













S
B


S

B
STT
B
TTSTT
GGG


TT


SSS


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEIT
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Known secondary structure (DSSP) T





GGGB
SSS
SBSS
TTTT
GGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence LDISSTLLNELKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFS
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Known secondary structure (DSSP)



TTT

TT





B
SSS

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence PKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMISTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLS
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Known secondary structure (DSSP)


SSS




TS



TS
SS

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence RKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLKVSLEDRRVI
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Known secondary structure (DSSP)




GGGS

GGGS

TT






S
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence FSRLMNAFVTIQNDVNAFIDSTKAQGRTVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIET
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Known secondary structure (DSSP)
GGGS








TSSS
TSS


SS
SSS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence NEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLL
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Known secondary structure (DSSP) T
TT


TTTTTTSSS

TTS

SS

TTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE
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Known secondary structure (DSSP)


S
GGGTT




TT

SS

SGGG
TT

S
GGGT

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRP
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Known secondary structure (DSSP)


STSBGGGGSB
TTTS
B




STSTT



G
 .........640.........650.........660.........670.........680.........690.........700
Sequence EDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFK
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Known secondary structure (DSSP) GGT

SSSS





SB
SSS
BS
SSS




SS
GGGG
TT

TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence DGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKW
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Known secondary structure (DSSP) SS




SS
TTS
S




GGGT
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence RTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCV
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Known secondary structure (DSSP) TTTT
TT


TT

T
 .........850.........860.........870.........880.........890.........900.........910
Sequence PDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV
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Known secondary structure (DSSP) TTTBSS
TTT
TSS

T



BTTBS



TTS
SSTTS
TT


TTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGG
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Known secondary structure (DSSP)


TTT


S



STT

TTSS
TTS
SSGGG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDP
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Known secondary structure (DSSP) TTB
TTTTTTTS
TT

TTTTTTSBSSTSSS
TTTS

SS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VLAKYNPAKYLGSVSENFQDKLESFLDKNSKGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPST
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Known secondary structure (DSSP) S
TTTBTT








TTB

TT

GGGG
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QMTLNTFNVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETT
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Known secondary structure (DSSP) TT
S






TTT

SS
SS

B
SSS
S
GGGT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GTARSYVIHMRFFDNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAVPRLQNM
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Known secondary structure (DSSP)




S


T

S

SSS







 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPHIDRCVH
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Known secondary structure (DSSP)
TT
SS
SSS


TTS



TT


TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PEPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSF
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Known secondary structure (DSSP)


BTTB


GGGTTTB
TTS
S

TT



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV
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Known secondary structure (DSSP) TTTSS


SSTS
S
TTS
T



ST


SS
 .........1480....
Sequence GTGSFDVLAKVPNA
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Known secondary structure (DSSP) GGGSS









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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