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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4byxV_

Fold library idPDB HeaderMoleculeTitle
c4byxV_PDB header: ribosomeChain: V: PDB Molecule: eukaryotic translation initiation factor 5b, probablePDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex


Added to library: Sat Nov 23 08:37:08 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KDLRSPICCILGVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPG
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Known secondary structure (DSSP)

B







SS
SSSS
SSS

B
SS

S



SSS



SS


 .........80.........90.........100.........110.........120.........130.........140
Sequence LLVIDTPGESFSNLRSRGSSLCNIAILVIDIMGLEQQTIESIKLLRDRKAPFVVALNKIDRLYDWKAIPN
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S
SSS
SSTTSSS







STT




S
SSTT



TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NSFRDSFAKQSRAVQEEFQSRYSKIQLELAEQGLNSELYFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLL
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Known secondary structure (DSSP) B
S


TTT


TTTS
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ELTQKRMSKQLMYLSVEATILEVKVVEGFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPL
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Known secondary structure (DSSP)
SGGGB




SSS
SSS

SSS

B

 .........290.........300.........310.........320.........330.........340.........350
Sequence RELRLKSEYVKEVKAALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDAGVVVKADTLGSLEAVV
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Known secondary structure (DSSP)

SS
S




SSSS




TT







 .........360.........370.........380.........390.........400.........410.........420
Sequence KILRDMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRL
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Known secondary structure (DSSP) TT



S


ST

SS
TTS
SS



TTTT



 .........430.........440.........450.........460.........470.........480.........490
Sequence MEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETVGT
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Known secondary structure (DSSP) TT





TT

SSS

BS





SS





 .........500.........510.........520.........530.........540.........550.........
Sequence VESMQDKGENLKSASRGQKVAMAIKDAVYGKTIEGDTLYVDIPENYILLTDEELDLMDKIAEIKRKKNP
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Known secondary structure (DSSP)

TTSB

SSS
SS

TTTT



B












T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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