Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bx9B_

Fold library idPDB HeaderMoleculeTitle
c4bx9B_PDB header: protein transportChain: B: PDB Molecule: vacuolar protein sorting-associated protein 33a;PDBTitle: human vps33a in complex with a fragment of human vps16


Added to library: Sat Jul 27 08:33:32 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRL
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
GGGGSSSS
S
S

TTT

TTT

SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYS
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)




S
S
T

TTS


SS


TTGGGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence LDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKR
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)

STT


TT






S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFATEAKKLQLNSAE
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)

S






S
SGGG

STTTS


BT
TT
STT





STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAELIKD
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTSBGGGTT

SST
 .........360.........370.........380.........390.........400.........410.........420
Sequence VTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYYKREIL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TSTTSSTTS

TT

TSB
 .........430.........440.........450.........460.........470.........480.........490
Sequence QTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLL
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
GGGTTSS
B

TT


T
B
SS

SSS

SGGGGGTTB

 .........500.........510.........520.........530.........540.........550.........560
Sequence SRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQNRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVI
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TT
GGGGTTSSS




GGG





T
B


SS
 .........570.........580.
Sequence ATTKLMNGTSWIEALMEKPFH
Predicted secondary structure









SS confidence




















Known secondary structure (DSSP) S
B

S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D