PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4bwiA_

Fold library id	PDB Header	Molecule	Title
c4bwiA_	PDB header: transferase	Chain: A: PDB Molecule: phytochrome-like protein cph2;	PDBTitle: structure of the phytochrome cph2 from synechocystis sp. pcc6803

Links to external resources
Added to library: Sat Nov 2 08:33:45 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N R S L E D F L R N V I N K F H R A L T L R E T L Q V I V E E A R I F L G V D R V K I Y K F A S D G S G E V L A E A V N R A A L P S L L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T
S
T T S
T T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H F P V E D I P P Q A R E E L G N Q R K M I A V D V A H R R K K S H E L S G R I S G H Y T T V D S C H I Q Y L L A M G V L S S L T V P V M Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T S
G G G T S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D Q Q L W G I M A V H H S K P R R F T E Q E W E T M A L L S K E V S L A I T Q S Q L S R Q V H Q Q Q V Q E A L V Q R L E T T V A Q Y G D R P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E T W Q Y A L E T V G Q A V E A D G A V L Y I A P D L T G S V A Q H Y Q W N L R F D W G N W L E T S L W Q E L M R G Q P S A N C V P H G Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S
S
T S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L G E L E Q R S D W I A P P E S L S A E N F Q S F L I V P L A A D Q Q W V G S L I L L R K E K S L V K H W A G K R G N I L P R L S F E A W E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T
T T T G G G
S S
S
S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . .

Sequence E T Q K L V P T W N R S E R K L A Q V A S T Q L Y M A I T Q Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	R	S	L	E	D	F	L	R	N	V	I	N	K	F	H	R	A	L	T	L	R	E	T	L	Q	V	I	V	E	E	A	R	I	F	L	G	V	D	R	V	K	I	Y	K	F	A	S	D	G	S	G	E	V	L	A	E	A	V	N	R	A	A	L	P	S	L	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S		S																			T		S									T	T	S											T	T	T	S				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	F	P	V	E	D	I	P	P	Q	A	R	E	E	L	G	N	Q	R	K	M	I	A	V	D	V	A	H	R	R	K	K	S	H	E	L	S	G	R	I	S	G	H	Y	T	T	V	D	S	C	H	I	Q	Y	L	L	A	M	G	V	L	S	S	L	T	V	P	V	M	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	S										T	S								G	G	G	T							S	S																					T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	Q	Q	L	W	G	I	M	A	V	H	H	S	K	P	R	R	F	T	E	Q	E	W	E	T	M	A	L	L	S	K	E	V	S	L	A	I	T	Q	S	Q	L	S	R	Q	V	H	Q	Q	Q	V	Q	E	A	L	V	Q	R	L	E	T	T	V	A	Q	Y	G	D	R	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T											S	S																																																						S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	T	W	Q	Y	A	L	E	T	V	G	Q	A	V	E	A	D	G	A	V	L	Y	I	A	P	D	L	T	G	S	V	A	Q	H	Y	Q	W	N	L	R	F	D	W	G	N	W	L	E	T	S	L	W	Q	E	L	M	R	G	Q	P	S	A	N	C	V	P	H	G	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		S										T	T										S			S							T	S								T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	G	E	L	E	Q	R	S	D	W	I	A	P	P	E	S	L	S	A	E	N	F	Q	S	F	L	I	V	P	L	A	A	D	Q	Q	W	V	G	S	L	I	L	L	R	K	E	K	S	L	V	K	H	W	A	G	K	R	G	N	I	L	P	R	L	S	F	E	A	W	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	T	T						T	T	T	G	G	G													S	S																					S						S			S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence	E	T	Q	K	L	V	P	T	W	N	R	S	E	R	K	L	A	Q	V	A	S	T	Q	L	Y	M	A	I	T	Q	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T