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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bujF_

Fold library idPDB HeaderMoleculeTitle
c4bujF_PDB header: hydrolaseChain: F: PDB Molecule: superkiller protein 3;PDBTitle: crystal structure of the s. cerevisiae ski2-3-8 complex


Added to library: Sat Aug 31 10:17:15 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DSMSDIKQLLKEAKQELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKALSSLNNVSSNRNLERATNHYV
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Known secondary structure (DSSP)

TT
SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence SAAKLVPDNLLAWKGLFLLFRTTEVVPDILSYDEYFDLCGQYADALLKQEQSQVELINDIKLLKKTHPDC
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Known secondary structure (DSSP)
TT
S
SSS
T



STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QKAFYQHLKPGSLMAETIGRTPQDALLNLIKILSNIETTEIGKTLSASDPDYQIKLNSFSWEIIKNSEID
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Known secondary structure (DSSP) STTST





SSSST

 .........220.........230.........240.........250.........260.........270.........280
Sequence QLYNQLVNIADDQKRSEIENQWLEYRIKVLKSMPLDVKKDFFTKVKEMVEDMVLVNHQSLLAWQKYFEWT
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Known secondary structure (DSSP)


TTS
TT
S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence DYEDLDNMDAPLIIKYFKKFPKDPLAMILYSWLSSKLSKYDIKSLEDDIEIGLLEEEVVTVLTENIVKCK
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Known secondary structure (DSSP)

S
GGGS
S
SS
STTS
S









TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NNILAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVHLPLTKREFSLDLATVYTYVDAPKDHNA
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Known secondary structure (DSSP) T
STT
T



STTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence ALKLYDNILSGDFSNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPNNLEVLSELSWSKAHMGYMDEAL
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Known secondary structure (DSSP) S

TT
TT
S

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence AGLDTVIKGIKGMDLRSIDFRALNLWRQAKVYIMKHAQENVKCAFKLLIQSIKILDTFAPGFSTLGDIYC
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Known secondary structure (DSSP)



S

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence HYYKDHLRAFKCYFKAFDLDAGDYTAAKYITETYASKPNWQAASSIASRLIKGEKAKAELRSNNWPFRVV
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Known secondary structure (DSSP) TT

S

TTT

TTTTGGGT

 .........640.........650.........660.........670.........680.........690.........700
Sequence GIAHLEKQEESDSIEWFQSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTFAQYFKAI
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Known secondary structure (DSSP) TT

TT
STT

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SLCDVGEYLESLDILEKVCQEAATEESFQIGLVEVLMRCSLDLYSQGFLLKSVSIAKDTIERIKIIISEL
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Known secondary structure (DSSP) T

TT
T
T
 .........780.........790.........800.........810.........820.........830.........840
Sequence KCENQQVWIYLSQVLRLFIWIESKVDTLPVESLVSIFENSQFSGSEEIDSVDNIKIDTLLDSTTDDNVSI
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Known secondary structure (DSSP)





TTGGG

S







TT
SS

 .........850.........860.........870.........880.........890.........900.........910
Sequence ACKFLILASKYSVSDQKFTDIAGTVRASYWYNIGISELTAFITLKEPQYRDAAIFAFKKSIQLQSNTSET
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Known secondary structure (DSSP) T



SS


STT

TT



 .........920.........930.........940.........950.........960.........970.........980
Sequence WIGLGIATMDINFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSSPWLG
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Known secondary structure (DSSP) TTT

TT
TT

TT
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MALILEEQGDIIGSSKLFAHSFILSNGRSKAAQFMYAKNVLENHINNGDDERDIETVEKLTTASIALEQF
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Known secondary structure (DSSP) T
TT

TSSS


TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FKKSPDSQFALQCALLTLERLHHYENANELANRLIGILEKKFEKTQDELFNFAIIKGQFARIHLGLGNFE
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Known secondary structure (DSSP) S


TT




T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LSIENADLSQGIISESSDESMKTKISNHICLGLSYFFLNDFDQTLNQFQELLSISKDSKHLVVLIAKVLY
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Known secondary structure (DSSP) TTT




SS


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DVGESDTKEIALQELTEYIATSGADLLVTLTIAAMSILDDKREDLSIILEELKALPLSKQIIDKHKDAPY
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Known secondary structure (DSSP) TT

T


T
T


SS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LIEEITKRLYRNDTGKQVWQRSAYFFPNNLKVWERLDKNIQRRIASNGQNKVTAEEMSKLYCESKNLRSI
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Known secondary structure (DSSP) T

GGGG
TT

TTSS


T

 .........1340.........1350.
Sequence QRGMFLCPWNVTAVKALNECF
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Known secondary structure (DSSP)
TTSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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