PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4buhA_

Fold library id	PDB Header	Molecule	Title
c4buhA_	PDB header: immune system	Chain: A: PDB Molecule: clone m0418 scfv;	PDBTitle: human ige against the major allergen bet v 1 - crystal2 structure of clone m0418 scfv

Links to external resources
Added to library: Sat Nov 23 08:48:20 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V Q L V Q S G A E V K K P G E S L K I S C K G S E Y S F P N Y W I A W V R Q M P G K G L E W M G M I Y P G D S D T R Y S P S F Q G Q V N I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G S
T T S
T T T T
T T T B T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D K S S R T A F L E W S S L K A S D S A T Y F C A R L G G Q L W N S Y Y Y Y Y Y M D V W G K G T T V T V S S G Y E L T Q P P S A S G T P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T S S
G G G
T T S S S
B B
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q R V T I S C S G S S S N I G G N T V N W Y Q Q V P G T A P R L L I Y K N N Q R P S G V P D R F S G S K S G T S A S L A I S G L R S E D E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T S
T T S
B T T T B
T T S
T T T T S S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . .

Sequence D Y Y C E A W D G G L R G G V F G G G T K L T V L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T B
-

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	Q	L	V	Q	S	G	A	E	V	K	K	P	G	E	S	L	K	I	S	C	K	G	S	E	Y	S	F	P	N	Y	W	I	A	W	V	R	Q	M	P	G	K	G	L	E	W	M	G	M	I	Y	P	G	D	S	D	T	R	Y	S	P	S	F	Q	G	Q	V	N	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T											S	S		G	G	G	S									T	T	S										T	T	T	T						T	T	T	B	T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	K	S	S	R	T	A	F	L	E	W	S	S	L	K	A	S	D	S	A	T	Y	F	C	A	R	L	G	G	Q	L	W	N	S	Y	Y	Y	Y	Y	Y	M	D	V	W	G	K	G	T	T	V	T	V	S	S	G	Y	E	L	T	Q	P	P	S	A	S	G	T	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T							S	S			G	G	G													T	T	S	S	S																							B	B			S						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	R	V	T	I	S	C	S	G	S	S	S	N	I	G	G	N	T	V	N	W	Y	Q	Q	V	P	G	T	A	P	R	L	L	I	Y	K	N	N	Q	R	P	S	G	V	P	D	R	F	S	G	S	K	S	G	T	S	A	S	L	A	I	S	G	L	R	S	E	D	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T	T	T	S									T	T	S							B	T	T	T	B			T	T	S		T	T							T	T							S	S			G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence	D	Y	Y	C	E	A	W	D	G	G	L	R	G	G	V	F	G	G	G	T	K	L	T	V	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T					B									-