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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bucA_

Fold library idPDB HeaderMoleculeTitle
c4bucA_PDB header: ligaseChain: A: PDB Molecule: udp-n-acetylmuramoylalanine--d-glutamate ligase;PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form


Added to library: Sat Jul 20 08:58:57 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PRGSHXKIGFLGFGKSNRSLLKYLLNHQEAKFFVSEAKTLDGETKKFLEEHSVEYEEGGHTEKLLDCDVV
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Known secondary structure (DSSP)

GGG
S
STT

S
SS


TT

SS

GGGGG
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YVSPGIKPDTSXIELLSSRGVKLSTELQFFLDNVDPKKVVGITGTDGKSTATALXYHVLSGRGFKTFLGG
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Known secondary structure (DSSP)
TTS
TTSTT

S
GGG
SSSTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence NFGTPAVEALEGEYDYYVLEXSSFQLFWSERPYLSNFLVLNISEDHLDWHSSFKEYVDSKLKPAFLQTEG
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Known secondary structure (DSSP) TTSS
GGGGGSS

S

T
SS


S



SSS

S
S


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence DLFVYNKHIERLRNLEGVRSRKIPFWTDENFATEKELIVRGKKYTLPGNYPYQXRENILAVSVLYXEXFN
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Known secondary structure (DSSP) SGGGGGTS

TT

SSSSSS
SSTT
SS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELESFLELLRDFKPLPHRXEYLGQIDGRHFYNDSKATSTHAVLGALSNFDKVVLIXCGIGKKENYSLFVE
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Known secondary structure (DSSP)
STT
TTS



TT
TT

STT
SSSB

S

 .........360.........370.........380.........390.........400.........410.........420
Sequence KASPKLKHLIXFGEISKELAPFVGKIPHSIVENXEEAFEKAXEVSEKGDVILLSPGGASFAKRGEHFREI
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Known secondary structure (DSSP) GGGSTGGG
TTS

SS

TT
SB



 .......
Sequence FKRHGGD
Predicted secondary structure


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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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