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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bubA_

Fold library idPDB HeaderMoleculeTitle
c4bubA_PDB header: ligaseChain: A: PDB Molecule: udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld-lysinePDBTitle: crystal structure of mure ligase from thermotoga maritima2 in complex with adp


Added to library: Sat Jul 20 09:02:26 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XNISTIVSNLKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRREIIPEVXEKGAVAVVVEREIDLDFP
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Known secondary structure (DSSP)

TTTTS
S




SSSTT

SS


TT
SSS


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTXXIYHXLTSLGERGSVLTTAVKRILGNSY
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Known secondary structure (DSSP) S
TT
TTTTSSSS
TTS



SS

SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence YDDITTPDAITILSAXKENREGGGKFFALEVSSHALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLK
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Known secondary structure (DSSP)
S

SS

TT
S

TTTTTSS





SSSSS
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AKLHLFDLLKDDGVAVLNESLADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTR
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Known secondary structure (DSSP) GGGTTGGGTTT

S
SSSTTSS


B

TT


SS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence AIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLLK
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Known secondary structure (DSSP) S

TTTTT

TTTTT


BTTBS
GGGTTTT




S
 .........360.........370.........380.........390.........400.........410.........420
Sequence NVRKISQGRVIVVFGAGGNSDRGKRPXXSEVASKLADVVILTTDDPRGEDPEQIXEDLIKGIDKRKPYLV
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Known secondary structure (DSSP)
SS



TTS
SSTT
S




SSS
TTTS
TTS
 .........430.........440.........450.........460.........470........
Sequence LFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVEEIIRDKLKG
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Known secondary structure (DSSP)
S


TT

S
TT

TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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