PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4bpxB_

Fold library id	PDB Header	Molecule	Title
c4bpxB_	PDB header: transferase	Chain: B: PDB Molecule: dna polymerase alpha catalytic subunit, dna primase large	PDBTitle: crystal structure of human primase in complex with the2 primase-binding motif of dna polymerase alpha

Links to external resources
Added to library: Sat Sep 28 08:22:34 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I S L I E F E N L A I D R V K L L K S V E N L S K L E S E L R K L R R D H I S H F I L R L A Y C Q S E E L R R W F I Q Q E M D L L R F R F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L P K D K I Q D F L K D S Q L Q F E A I S D E E K T L R E Q E I V A S S P S L L G F E S I Y K I P F A D A L D L F R G R K V Y L E D G F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
B
S T T T
S
T T S
G G G G T T T
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 .

Sequence Y V P L K D I V A I I L N E F R A K L S K A L A L T A R S L D E R L Q P L L N H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	S	L	I	E	F	E	N	L	A	I	D	R	V	K	L	L	K	S	V	E	N	L	S	K	L	E	S	E	L	R	K	L	R	R	D	H	I	S	H	F	I	L	R	L	A	Y	C	Q	S	E	E	L	R	R	W	F	I	Q	Q	E	M	D	L	L	R	F	R	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																															T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	P	K	D	K	I	Q	D	F	L	K	D	S	Q	L	Q	F	E	A	I	S	D	E	E	K	T	L	R	E	Q	E	I	V	A	S	S	P	S	L	L	G	F	E	S	I	Y	K	I	P	F	A	D	A	L	D	L	F	R	G	R	K	V	Y	L	E	D	G	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													T	T					B			S						T						T	T		S				T	T	S							G	G	G	G					T	T	T		S				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Sequence	Y	V	P	L	K	D	I	V	A	I	I	L	N	E	F	R	A	K	L	S	K	A	L	A	L	T	A	R	S	L	D	E	R	L	Q	P	L	L	N	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																											G	G	G