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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bmlA_

Fold library idPDB HeaderMoleculeTitle
c4bmlA_PDB header: virusChain: A: PDB Molecule: major capsid protein;PDBTitle: c-alpha backbone trace of major capsid protein gp39 found2 in marine virus syn5.


Added to library: Sat May 24 08:26:12 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VRYATALKLFSGEVFTAFNNASIFKGLVRSYDLRGGKSKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKT
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STT





GGGGGTS
S






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 .........80.........90.........100.........110.........120.........130.........140
Sequence LVMDDLLVSSQFVYSLDEIFSQYSTRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNI
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TTTTTS




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 .........150.........160.........170.........180.........190.........200.........210
Sequence GAGNTNDAQAIVDGFFEAAAVLDERSAPQEGRVAVLSPRQYYSLISSVDTNILNREIGNSQGDMNSGKGL
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S
TT
TTTSSS
S







TTTSS
SSS

S





SSS
TTTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence YSIAGIRILKSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTSGDFNV
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STTGGG





S



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S




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TTGGG



SS
 .........290.........300.........
Sequence QYQGDLIVGKLAMGCGSLRTSVAGSFQAA
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Known secondary structure (DSSP)

S










TT

S



SS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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