PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4bk9B_

Fold library id	PDB Header	Molecule	Title
c4bk9B_	PDB header: lyase	Chain: B: PDB Molecule: 2-dehydro-3-deoxyphosphogluconate	PDBTitle: crystal structure of 2-keto-3-deoxy-6-phospho-gluconate2 aldolase from zymomonas mobilis atcc 29191

Links to external resources
Added to library: Sat May 3 08:11:46 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R D I D S V M R L A P V M P V L V I E D I A D A K P I A E A L V A G G L N V L E V T L R T P C A L E A I K I M K E V P G A V V G A G T V L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
G G G T T
T T S T T T S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A K M L D Q A Q E A G C E F F V S P G L T A D L G K H A V A Q K A A L L P G V A N A A D V M L G L D L G L D R F K F F P A E N I G G L P A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S
T T
S T
T T G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . .

Sequence K S M A S V F R Q V R F C P T G G I T P A S A P K Y L E N P S I L C V G G S W V V P A G K P D V A K I T A L A K E A S A F K R A A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B S S
T T T T S T T B
S T T S
S S S
T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	D	I	D	S	V	M	R	L	A	P	V	M	P	V	L	V	I	E	D	I	A	D	A	K	P	I	A	E	A	L	V	A	G	G	L	N	V	L	E	V	T	L	R	T	P	C	A	L	E	A	I	K	I	M	K	E	V	P	G	A	V	V	G	A	G	T	V	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S								S		G	G	G											T	T								T	T	S	T	T										T	S	T	T										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	K	M	L	D	Q	A	Q	E	A	G	C	E	F	F	V	S	P	G	L	T	A	D	L	G	K	H	A	V	A	Q	K	A	A	L	L	P	G	V	A	N	A	A	D	V	M	L	G	L	D	L	G	L	D	R	F	K	F	F	P	A	E	N	I	G	G	L	P	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		S					S	S												T	T									S											T							T	T	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence	K	S	M	A	S	V	F	R	Q	V	R	F	C	P	T	G	G	I	T	P	A	S	A	P	K	Y	L	E	N	P	S	I	L	C	V	G	G	S	W	V	V	P	A	G	K	P	D	V	A	K	I	T	A	L	A	K	E	A	S	A	F	K	R	A	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T						B	S	S			T	T	T						T	S	T	T	B						S	T	T	S		S	S	S															T				S	S