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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bjrA_

Fold library idPDB HeaderMoleculeTitle
c4bjrA_PDB header: ligaseChain: A: PDB Molecule: pup--protein ligase, prokaryotic ubiquitin-like proteinPDBTitle: crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa


Added to library: Sat May 4 08:45:28 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TVESALTRRIMGIETEYGLTFVDGDSKKLRPDEIARRMFRPIVEKYSSSNIFIPNGSRLYLNVGSHPEYA
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Known secondary structure (DSSP)
GGGS
SS


TT
TS
S

TTS

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TAECDNLTQLINFEKAGDVIADRMAVDAEESLAKEDIAGQVYLFKNNVDSVGNSYGCHENYLVGRSMPLK
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BSSTT



SSB
TT

B

TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence ALGKRLMPFLITRQLICGAGRIHHPNPSFPLGYCISQRSDHVWEGVSSASRPIINTRDEPHADSHSYRRL
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Known secondary structure (DSSP) TT









SS
SS




S

S

SS
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence HVIVGDANMAEPSIALKVGSTLLVLEMIEADFGLPSLELANDIASIREISRDATGSTLLSLKDGTTMTAL
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Known secondary structure (DSSP)





SST






BS
TTSS
SS


BTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QIQQVVFEHASKWLEQRPEPEFSGTSNTEMARVLDLWGRMLKAIESGDFSEVDTEIDWVIKKKLIDRFIQ
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Known secondary structure (DSSP)



SSSS




TTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RGNLGLDDPKLAQVDLTYHDIRPGRGLFSVLQSRGMIKRWTTDEAILAAVDTAPDTTRAHLRGRILKAAD
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Known secondary structure (DSSP) T

TT
TTB
STTTST
S

SS
S

SSST
 .........430.........440.........450.........460.........470.........480.........490
Sequence TLGVPVTVDWMRHKVNRPEPQSVELGDPFSAVNSEVDQLIEYMTVHAGSASGTSLLDEIDGLLENNAEEF
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Known secondary structure (DSSP) T


SS
SSS



SS





S
S
 .........500
Sequence VRSYVQKGGE
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Known secondary structure (DSSP)







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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