PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4biyD_

Fold library id	PDB Header	Molecule	Title
c4biyD_	PDB header: transferase	Chain: D: PDB Molecule: sensor protein cpxa;	PDBTitle: crystal structure of cpxahdc (monoclinic form 2)

Links to external resources
Added to library: Sat Feb 15 09:56:16 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S F N Q V V T A L E R M M T S Q Q R L L S D I S H E L R T P L T R L Q L G T A L L R R R S G E S K E L E R I E T E A Q R L D S M I N D L L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M S R N Q Q K N A L V S E T I K A N Q L W S E V L D N A A F E A E Q M G K S L T V N F P P G P W P L Y G N P N A L E S A L E N I V R N A L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y S H T K I E V G F A V D K D G I T I T V D D D G P G V S P E D R E Q I F R P G L A I V E T A I Q Q H R G W V K A E D S P L G G L R L V I W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S S
T T T T
T T
T T S S

. . . . . .

Sequence L P L Y K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	F	N	Q	V	V	T	A	L	E	R	M	M	T	S	Q	Q	R	L	L	S	D	I	S	H	E	L	R	T	P	L	T	R	L	Q	L	G	T	A	L	L	R	R	R	S	G	E	S	K	E	L	E	R	I	E	T	E	A	Q	R	L	D	S	M	I	N	D	L	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																																										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	S	R	N	Q	Q	K	N	A	L	V	S	E	T	I	K	A	N	Q	L	W	S	E	V	L	D	N	A	A	F	E	A	E	Q	M	G	K	S	L	T	V	N	F	P	P	G	P	W	P	L	Y	G	N	P	N	A	L	E	S	A	L	E	N	I	V	R	N	A	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																				T											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	S	H	T	K	I	E	V	G	F	A	V	D	K	D	G	I	T	I	T	V	D	D	D	G	P	G	V	S	P	E	D	R	E	Q	I	F	R	P	G	L	A	I	V	E	T	A	I	Q	Q	H	R	G	W	V	K	A	E	D	S	P	L	G	G	L	R	L	V	I	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S										S	S									S	S					T	T					T	T														T	T									T	T	S	S
	.	.	.	.	.	.
Sequence	L	P	L	Y	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)