PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4bgnB_

Fold library id	PDB Header	Molecule	Title
c4bgnB_	PDB header: transport protein	Chain: B: PDB Molecule: voltage-gated sodium channel;	PDBTitle: cryo-em structure of the navct voltage-gated sodium channel

Links to external resources
Added to library: Sat Jul 13 08:30:11 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R F T S A I I V L I V I N A I V V G M E T Y P G I Y Q P Y Q D W F Y L I D R M I L W V F T A E I I L K L V A T R P R Y H F F K D S W N V F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F L I V A S G H L F V G A Q F V T V L R V L R V L R L L R A V T V I P S L G N I M L L M G L I F Y I F G V M G T F L F R D V A P E Y F G S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S T T G G G G G G S S
T T T
T T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H L S L I T L F Q V V T L E S W A S G I M R P I M A E V F W S W I Y F V A F I L V G T F V I F N L F V G V I V S N V E R A E T E D A E Q E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T T T S S S T T

.

Sequence G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	F	T	S	A	I	I	V	L	I	V	I	N	A	I	V	V	G	M	E	T	Y	P	G	I	Y	Q	P	Y	Q	D	W	F	Y	L	I	D	R	M	I	L	W	V	F	T	A	E	I	I	L	K	L	V	A	T	R	P	R	Y	H	F	F	K	D	S	W	N	V	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T						T	T	T																										T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	L	I	V	A	S	G	H	L	F	V	G	A	Q	F	V	T	V	L	R	V	L	R	V	L	R	L	L	R	A	V	T	V	I	P	S	L	G	N	I	M	L	L	M	G	L	I	F	Y	I	F	G	V	M	G	T	F	L	F	R	D	V	A	P	E	Y	F	G	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		S	S	S	T	T								G	G	G	G	G	G						S	S																									T	T	T		T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	L	S	L	I	T	L	F	Q	V	V	T	L	E	S	W	A	S	G	I	M	R	P	I	M	A	E	V	F	W	S	W	I	Y	F	V	A	F	I	L	V	G	T	F	V	I	F	N	L	F	V	G	V	I	V	S	N	V	E	R	A	E	T	E	D	A	E	Q	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S	S														T	T																								T	T	S	S	S	T	T
	.
Sequence	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)