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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4bedD_

Fold library idPDB HeaderMoleculeTitle
c4bedD_PDB header: oxygen transportChain: D: PDB Molecule: hemocyanin klh1;PDBTitle: keyhole limpet hemocyanin (klh): 9a cryoem structure and2 molecular model of the klh1 didecamer reveal the interfaces3 and intricate topology of the 160 functional units


Added to library: Sat Jan 11 09:54:06 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VMIRKDITQLDKRQQLSLVKALESMKADHSSDGFQAIASFHALPPLCPSPAASKRFACCVHGMATFPQWH
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Known secondary structure (DSSP)

BTTT



STTSSSS

SS
SS
SS





TTSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLYTVQFQDSLRKHGAVVGLPYWDWTLPRSELPELLTVSTIHDPETGRDIPNPFIGSKIEFEGENVHTKR
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Known secondary structure (DSSP) T

S


B


SS

SS


S

TTT



TTT

B
SSSS

SB


 .........150.........160.........170.........180.........190.........200.........210
Sequence DINRDRLFQGSTKTHHNWFIEQALLALEQTNYCDFEVQFEIMHNGVHTWVGGKEPYGIGHLHYASYDPLF
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Known secondary structure (DSSP)




GGG


SSSS



STT
SSSTTSTTST
 .........220.........230.........240.........250.........260.........270.........280
Sequence YIHHSQTDRIWAIWQSLQRFRGLSGSEANCAVNLMKTPLKPFSFGAPYNLNDHTHDFSKPEDTFDYQKFG
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Known secondary structure (DSSP) TS
SS


S
S

TTTSS
TTT


TSS
GGGS
 .........290.........300.........310.........320.........330.........340.........350
Sequence YIYDTLEFAGWSIRGIDHIVRNRQEHSRVFAGFLLEGFGTSATVDFQVCRTAGDCEDAGYFTVLGGEKEM
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Known secondary structure (DSSP) S


BTTB
TS





SS

SSS



SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence PWAFDRLYKYDITETLDKMNLRHDEIFQIEVTITSYDGTVLDSGLIPTPSIIYDPAHHDISSHHLSLNKV
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Known secondary structure (DSSP)



SS

T

SSS

SSS


SSS










S
S

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence RHDLSTLSERDIGSLKYALSSLQADTSADGFAAIASFHGLPAKCNDSHNNEVACCIHGMPTFPHWHRLYT
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Known secondary structure (DSSP)
BTTT



STTSTTSSS

SS
SSSS


SS

SSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LQFEQALRRHGSSVAVPYWDWTKPIHNIPHLFTDKEYYDVWRNKVMPNPFARGYVPSHDTYTVRDVQEGL
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Known secondary structure (DSSP) T
SS


B


SS

SS


SB


SSS



B
TTT

TTTT





GGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence FHLTSTGEHSALLNQALLALEQHDYCDFAVQFEVMHNTIHYLVGGPQVYSLSSLHYASYDPIFFIHHSFV
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Known secondary structure (DSSP) S


SSSS

S
S
TT
SSSTTSTTST
 .........640.........650.........660.........670.........680.........690.........700
Sequence DKVWAVWQALQEKRGLPSDRADCAVSLMTQNMRPFHYEINHNQFTKKHAVPNDVFKYELLGYRYDNLEIG
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Known secondary structure (DSSP) TS
SS

SS
S

TTTTSTTS

TST
GGGTTS


BT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GMNLHEIEKEIKDKQHHVRVFAGFLLHGIRTSADVQFQICKTSEDCHHGGQIFVLGGTKEMAWAYNRLFK
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Known secondary structure (DSSP) TB
S





SS

SSS



GGG




SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence YDITHALHDAHITPEDVFHPSEPFFIKVSVTAVNGTVLPASILHAPTIIYEPGLDHHEDHHSSSMAGHGV
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Known secondary structure (DSSP)
T

SSS
SSSSSS



SSSSB

STTS






S

S






S
 .........850.........860.........870.........880.........890.........900.........910
Sequence RKEINTLTTAEVDNLKDAMRAVMADHGPNGYQAIAAFHGNPPMCPMPDGKNYSCCTHGMATFPHWHRLYT
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Known secondary structure (DSSP)
BSSS



STTSSSS


TTS





SSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence KQMEDALTAHGARVGLPYWDGTTAFTALPTFVTDEEDNPFHHGHIDYLGVDTTRSPRDKLFNDPERGSES
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Known secondary structure (DSSP) T

S


B


SS

SSS


TT
TTT

TTTT





GGGS


SSSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FFYRQVLLALEQTDFCQFEVQFEITHNAIHSWTGGLTPYGMSTLEYTTYDPLFWLHHANTDRIWAIWQAL
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Known secondary structure (DSSP)

STT
TTSTTSTTTGGGST
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QEYRGLPYDHANCEIQAMKRPLRPFSDPINHNAFTHSNAKPTDVFEYSRFNFQYDNLRFHGMTIKKLEHE
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Known secondary structure (DSSP) TS
SS

SSSS

TTTTSTT
S
T
ST
SGGGTS


BTTB
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LEKQKEEDRTFAAFLLHGIKKSADVSFDVCNHDGECHFAGTFAILGGEHEMPWSFDRLFRYDITQVLKQM
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Known secondary structure (DSSP) S


B

SS

TTS



TT



B
SS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence HLEYDSDFTFHMRIIDTSGKQLPSDLIKMPTVEHSPGGKHHEKHHEDHHEDILVRKNIHSLSHHEAEELR
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Known secondary structure (DSSP) T

SSS

TTS

GGGS
















SSS
BSSS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence DALYKLQNDESHGGYEHIAGFHGYPNLCPEKGDEKYPCCVHGMSIFPHWHRLHTIQFERALKKHGSHLGI
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Known secondary structure (DSSP) T

STTSSSS


STT
SS






SSTTTT
SS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PYWDWTQTISSLPTFFADSGNNNPFFKYHIRSINQDTVRDVNEAIFQQTKFGEFSSIFYLALQALEEDNY
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Known secondary structure (DSSP)
B

TTS

SSS


TTT
TTT

B

SS

B













SSS
TTS
SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence CDFEVQYEILHNEVHALIGGAEKYSMSTLEYSAFDPYFMIHHASLDKIWIIWQELQKRRVKPAHAGSCAG
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Known secondary structure (DSSP) TT
TTSSS
TSSTT


SSSSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DIMHVPLHPFNYESVNNDDFTRENSLPNAVVDSHRFNYKYDNLNLHGHNIEELEEVLRSLRLKSRVFAGF
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Known secondary structure (DSSP) TTTSS

TTTSSTTS


TTST
GGGGSS


BTTB
TS

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VLSGIRTTAVVKVYIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFDITETVHNLNLTDDHVKFRFDL
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Known secondary structure (DSSP)

B

SS
B

SSS






TT



B
SS



B
T

SSSS

B

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence KKYDHTELDASVLPAPIIVRRPNNAVFDIIEIPIGKDVNLPPKVVVKRGTKIMFMSVDEAVTTPMLNLGS
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Known secondary structure (DSSP) SSSB









SSS
S




SSS


S




STT





STTS
S





S
 .........1690.........1700.........1710.........1720.........1730....
Sequence YTAMFKCKVPPFSFHAFELGKMYSVESGDYFMTASTTELCNDNNLRIHVHVDDE
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Known secondary structure (DSSP) STT


SS



S

SS










SSTTT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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