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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4b4tM_

Fold library idPDB HeaderMoleculeTitle
c4b4tM_PDB header: hydrolaseChain: M: PDB Molecule: 26s protease regulatory subunit 6a;PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome


Added to library: Sat Sep 8 15:29:00 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVVGKAAVVKTSSRQTVFLPMVGLVDP
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Known secondary structure (DSSP)

SSS






STTS


SSS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence DKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKF
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Known secondary structure (DSSP) TTS
SS
SSS
SSSS
S
S

SS
S

GGGS
S
T
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTI
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S
TTSST
GGGG
SS
SS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKI
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Known secondary structure (DSSP)
T


SSGGGGTTTTS
SS
SS
SS




TTT
STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE
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Known secondary structure (DSSP)




S
B
S



SS

T
SSB
 .........360.......
Sequence GISEVQARKSKSVSFYA
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Known secondary structure (DSSP) S
SSS









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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