PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4b4tJ_

Fold library id	PDB Header	Molecule	Title
c4b4tJ_	PDB header: hydrolase	Chain: J: PDB Molecule: 26s protease regulatory subunit 8 homolog;	PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome

Links to external resources
Added to library: Sat Sep 8 15:23:24 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E Q K I Q E T E L K I R S K T E N V R R L E A Q R N A L N D K V R F I K D E L R L L Q E P G S Y V G E V I K I V S D K K V L V K V Q P E G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y I V D V A K D I N V K D L K A S Q R V C L R S D S Y M L H K V L E N K A D P L V S L M M V E K V P D S T Y D M V G G L T K Q I K E I K E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
S S
T T T
S
S
T T S
S
S
G G G S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I E L P V K H P E L F E S L G I A Q P K G V I L Y G P P G T G K T L L A R A V A H H T D C K F I R V S G A E L V Q K Y I G E G S R M V R E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
S
S S S S T
G G G G S
S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F V M A R E H A P S I I F M D E I D S I G S T R V E G S G G G D S E V Q R T M L E L L N Q L D G F E T S K N I K I I M A T N R L D I L D P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S
T T S
S
S S S G G G G T T T
S
S S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L L R P G R I D R K I E F P P P S V A A R A E I L R I H S R K M N L T R G I N L R K V A E K M N G C S G A D V K G V C T E A G M Y A L R E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S S
T T S B
S S
S
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . .

Sequence R I H V T Q E D F E L A V G K V M N K N Q E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	Q	K	I	Q	E	T	E	L	K	I	R	S	K	T	E	N	V	R	R	L	E	A	Q	R	N	A	L	N	D	K	V	R	F	I	K	D	E	L	R	L	L	Q	E	P	G	S	Y	V	G	E	V	I	K	I	V	S	D	K	K	V	L	V	K	V	Q	P	E	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																									T	T	S							S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	I	V	D	V	A	K	D	I	N	V	K	D	L	K	A	S	Q	R	V	C	L	R	S	D	S	Y	M	L	H	K	V	L	E	N	K	A	D	P	L	V	S	L	M	M	V	E	K	V	P	D	S	T	Y	D	M	V	G	G	L	T	K	Q	I	K	E	I	K	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S		T	T	T			S	S							T	T	T		S										S			T	T	S						S		S			G	G	G	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	E	L	P	V	K	H	P	E	L	F	E	S	L	G	I	A	Q	P	K	G	V	I	L	Y	G	P	P	G	T	G	K	T	L	L	A	R	A	V	A	H	H	T	D	C	K	F	I	R	V	S	G	A	E	L	V	Q	K	Y	I	G	E	G	S	R	M	V	R	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T														T											S		S	S	S	S													T								G	G	G	G	S		S	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	V	M	A	R	E	H	A	P	S	I	I	F	M	D	E	I	D	S	I	G	S	T	R	V	E	G	S	G	G	G	D	S	E	V	Q	R	T	M	L	E	L	L	N	Q	L	D	G	F	E	T	S	K	N	I	K	I	I	M	A	T	N	R	L	D	I	L	D	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		S							S	S	S			T	T	S		S		S	S	S	G	G	G	G															T	T	T												S		S	S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	L	R	P	G	R	I	D	R	K	I	E	F	P	P	P	S	V	A	A	R	A	E	I	L	R	I	H	S	R	K	M	N	L	T	R	G	I	N	L	R	K	V	A	E	K	M	N	G	C	S	G	A	D	V	K	G	V	C	T	E	A	G	M	Y	A	L	R	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T	S	S																							T	T	S	B			S	S												S																				T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence	R	I	H	V	T	Q	E	D	F	E	L	A	V	G	K	V	M	N	K	N	Q	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	B																		T