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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4b3yB_

Fold library idPDB HeaderMoleculeTitle
c4b3yB_PDB header: transferaseChain: B: PDB Molecule: fatty acid synthase;PDBTitle: cryo-em structure of the mycobacterial fatty acid synthase


Added to library: Tue Jan 22 11:53:01 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AHALVDRLSAGEPYAVAFGGQGSAWLETLEELVSSAGIESELATLAGEAELLLEPVASELVVVRPIGFEP
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Known secondary structure (DSSP)

S



S
S
T
S

SS

S

TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LQWVRALAAEEPVPSDKQLTSAAVSVPGVLLTQIAAVRALARQGMDLTATPPVAVAGHSQGVLAVQALAA
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Known secondary structure (DSSP) TSSS



SSSS

S
TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KGAKDVELLALAQLIGAAGTLVARRRGITVLGDRPPMVSVTNADPERIYELLEEFSSDVRTVLPPVLSIR
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Known secondary structure (DSSP)
GGG






TTTT

SSS
TTS
TTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NGRRSVVITGTPEQLSRFELYCTQIAEKEEAERKNKLRGGAVFAPVFDPVQVEVGFHTPRLSDGIEIVGR
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Known secondary structure (DSSP)
SSS
S
TTT
STT





S

S

SSGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence WAETVGLDVELAKELTESILVRQVDWVDEITELHEAGARWILDLGPGDILTRLTAPVIRGLGIGIVPAAT
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Known secondary structure (DSSP) TTTT

TTTS
B

TTT


SSSS
SGGGS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RGGQRNLFTVGAVPEVARPWSSYAPTVVKLPDGSVKLETKFTRLTGRSPILLAGMTPTTVDAKIVAAAAN
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Known secondary structure (DSSP) T
SSS






GGGG


TT


SS
S


TS
 .........430.........440.........450.........460.........470.........480.........490
Sequence AGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGL
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Known secondary structure (DSSP) TT

STT

SS
TT



S
TT
S

 .........500.........510.........520.........530.........540.........550.........560
Sequence VVSAGIPDLEEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDL
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Known secondary structure (DSSP) SS


TSTT
S


STTSTTS


SSSS

S

 .........570.........580.........590.........600.........610.........620.........630
Sequence DDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEATTSPQ
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Known secondary structure (DSSP) TT
TTSS


TTTTTGGGGTTT





S
SSTTTT
TTS
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence VKQLLVETKGTEAWVGAGKAANGMASGRSQLGADIHEIDNAASRCGRLLDEVAGDADAVAERRDEIIAAM
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Known secondary structure (DSSP)



SS


SSS
BTT
TTS
TTT

TTTSTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence AQTAKPYFGDVAEMTYLQWLRRYVELAIGDGNSTADTKRPDSPWLDITWRDRFEQMLKRAEARLHPQDFG
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Known secondary structure (DSSP) TT



S
TTTS
S
TTTTTTT
TT



S
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence PIETLFDADADGERLLEDPEAAITALLQRYPDAETVVLHPADVPFFVELCKTLGKPVNFVPVIDKDVRRW
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Known secondary structure (DSSP) T
S

GGGGTS


TT
SS

SS



STT
 .........850.........860.........870.........880.........890.........900.........910
Sequence WRSDSLWQAHDARYEADQVCVIPGTAAVAGITRVDEPVGELLDRFEQAAVDEVLGAGAXXXXXXXXXXXX
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Known secondary structure (DSSP) TT
SSTTBS

S
TTSS




SSGGGG


SS

TTSS
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence XXXXGPLAVVLDAPDVLWAGRMSVNPVHRIAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

SS

STT
TT
SSSSS
STT
TTT
STT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence XXXXIEIRFTLTDVVRSGGAPIVEVDDAATAMRAVLAIAAGVEGPENLPKVVDNTATVTVDWDPERVADH
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Known secondary structure (DSSP) TT
TTSSS
S
TTTTT
S




TTS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TGVTATFGAPLAPTLTVVPDALVGRCWPAVFAAIGSAATEAGFPVIEGLLSLVHLDHAARLLAELPKEPA
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Known secondary structure (DSSP) S


TTT




SS
GGGGGGGS
S




STT
SS



SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EFTVTAKASAATDTEVGRVVPVSVEVRNAADGALLATLEERFAIRXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)




SS
TTTTSS


SS
SS







SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence XXXXXXXVTVGAPVDMRPFAVVSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTATDGKPVPPA
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Known secondary structure (DSSP)

S
S



TTSS
TT
SSS


TTSTT

TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence KLIGWTARFLGMVKPGDQVDFRVDRVGIDVGAEVLEVSARIGSELVMAATARLAAPKTVYAFPGQGIQHK
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Known secondary structure (DSSP) T
S


SS
TTTT
S


SS


T
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence GMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASGVHYHHPDGVLFLTQFTQVAMATV
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Known secondary structure (DSSP) TTT
SS

S

S
SS

SS
STTS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence AAAQVAEMREQGAFVEGAIACGHSVGEYTALACVSGVYELEALLEVVFHRGSKMHDIVPRDELGRSNYRL
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Known secondary structure (DSSP) TT
S
TT

STT

S
SSS


SS


S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence AAIRPSQIDLDDADVKDFVAEISERTGEFLEIVNFNLRGSQYAIAGTVAGLEALEEEIERRRQITGGKRS
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Known secondary structure (DSSP)


SSS





SSSS
STT
SS
TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FILVPGIDVPFHSSVLRVGVADFRRSLERVMPRDKDPELIIGRYIPNLVPRPFTLDRDFIQEIRDLVPAE
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Known secondary structure (DSSP)
SS




SSTT
GGGS
S


TTT
SSS
S



SS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence PLDEVLADYDTWRNEKPKELCRKVVIELLAWQFASPVRWIETQDLLFIEEAAGGLGVERFVEIGVKSAPT
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Known secondary structure (DSSP)




STTTTTTS





SGGG
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VAGLATNTLKLPEYSHSTVEVLNSERDAAVLFATDSAALGEFAEKVTGPDGVLASAARLVLNQLGLSDVV
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Known secondary structure (DSSP) TTTTT


TTT
S




TTTT


S


SS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TTPEAATDAELIDLVTAELGSDWPRLVAPTFDARKAVVFDDRWASAREDLVKLWLAEEXXXXXXXXXXXX
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Known secondary structure (DSSP) S
STS



TTS


S

S
TT
S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVAVVTGASKGSIAASVVGQL
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Known secondary structure (DSSP) TT

SS

SSST





S

TTS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWVGTEQTESLGPQSIH
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Known secondary structure (DSSP) TT
S

S

TT


TT
TS

SSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPGSPNR
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Known secondary structure (DSSP)





S







TTS
TTSTTT




SST
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GMFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVSAVEEAGVTTYTTD
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Known secondary structure (DSSP) TS
SS
SSGGG
STTTTT



STTTTTTTTTGGGS
B
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence EMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAREEMSGAADXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTSS

SBS
SS



T















 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence XXXXXXXXXXXXXXXXDVDPADLVVIVGGAELGPYGSSRTRFEMEVSGELSAAGVLELAWTTGMVKWEDD
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Known secondary structure (DSSP)













STTS
GGG
BTTBSTSS

TT

S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence PKAGWYDTETGELVPECEIVERYHDAVVERCGIREFVDDGAIDPDHASPLLVSVFLDKDFTFVVSSEADA
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Known secondary structure (DSSP) TT
TTT

B

SSTSS


SSS

SSS

SS




 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence RAFVQFDPEHTVARPLPDSSDWEVTRKAGTEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRV
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Known secondary structure (DSSP) TTSTTS
TTT


TT


S




TT

TTTTT

S
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence ALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNV
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Known secondary structure (DSSP) TTS
S
GGGS
GGGSS

TT



TTTSTT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence VAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADT
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Known secondary structure (DSSP) TT


S


B
TT
TTS
S


T
B

 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence EMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPG
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Known secondary structure (DSSP) TT

TTTS

SSBTT


B
BB
T










SS


 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQ
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Known secondary structure (DSSP)
GGGGGSTTGGGSTTT

GGG





TTTT

TT


S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence KTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSGHFVWVREPLDLRGKFPLKAGLVTSL
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Known secondary structure (DSSP)
B
STT

B


TT
SSB
GGGGG
SS
SS
B


TTS


 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence GFGHVSGLVALVHPEAFIAALDPSEREDYRTRAEQRMLAGQRRLVSAIAGGRPMYEKPADRRFDHDVPEK
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Known secondary structure (DSSP) TTT
GGGTGGGSTTT





SS
 .........2810.........2820..
Sequence RQEAAMLLSTDARLGENDQYVL
Predicted secondary structure










SS confidence





















Known secondary structure (DSSP) STT


BTTTTSB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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