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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4b3gA_

Fold library idPDB HeaderMoleculeTitle
c4b3gA_PDB header: hydrolase/rnaChain: A: PDB Molecule: dna-binding protein smubp-2;PDBTitle: crystal structure of ighmbp2 helicase in complex with rna


Added to library: Sat Sep 29 15:38:09 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AAVESFVTKQLDLLELERDAEVEERRSWLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAAL
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Known secondary structure (DSSP)





SSSTTTTTTT

SSSS



 .........80.........90.........100.........110.........120.........130.........140
Sequence PSNSFTSGDIVGLYDGSQLATGILTRVTQKSVTVAFDEQQSLDRENSYRLLKLANDVTYRRLKKALIALK
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Known secondary structure (DSSP)

S


TT


B








SS








TTS
B



 .........150.........160.........170.........180.........190.........200.........210
Sequence KYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE
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Known secondary structure (DSSP) T

SSSTTSSS












S
TT

T
SS

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADI
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Known secondary structure (DSSP) TT

SSTT


S
STTS
GGGGGGBSSS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence RKDIDQVFVKNNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQ
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Known secondary structure (DSSP) TSSS




ST
SGGGG
TTSGGGGS
TT

STTGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence ALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIM
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Known secondary structure (DSSP) S
TT
S
TTS




S
TTT

GGGT

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence RWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELQSKGNPGEVRLVSLHIQA
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Known secondary structure (DSSP) STT


TTTTT

GGGSTT



TTTT
S
TTS









 .........500.........510.........520.........530.........540.........550.........560
Sequence LVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAED
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Known secondary structure (DSSP) TT

GGGSSTTTTT
TT
STT
SS






TT


TTTT
 .........570.........580.........590.........600.........610....
Sequence RRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDIVP
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Known secondary structure (DSSP) TT
TTSSS
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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