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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4b2oB_

Fold library idPDB HeaderMoleculeTitle
c4b2oB_PDB header: hydrolaseChain: B: PDB Molecule: ymdb phosphodiesterase;PDBTitle: crystal structure of bacillus subtilis ymdb, a global2 regulator of late adaptive responses.


Added to library: Sat Jul 27 08:30:50 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTW
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Known secondary structure (DSSP)


BB

S
TBTTTTSS

TT
S

TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DKKEIFDFIDDVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAK
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Known secondary structure (DSSP) SSTTGGGSSSB


TTS
TT
SS
STT

TTS


S
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence RTPYIFIDFHAEATSEKLALGWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDR
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Known secondary structure (DSSP) T
S

S
TBTTBSSSSS

S


TTS
S



BSSSBTTB
 .........220.........230.........240.........250.........260....
Sequence ETIIKRFKTNLPVRFTVAEGKTTLSGVVIDIDDQTKKAVKIERILINDDHMFFE
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Known secondary structure (DSSP)






B

SS
TTT

BTTB




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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