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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4b28A_

Fold library idPDB HeaderMoleculeTitle
c4b28A_PDB header: lyaseChain: A: PDB Molecule: metallopeptidase, family m24, putative;PDBTitle: crystal structure of dmsp lyase rddddp from roseobacter denitrificans


Added to library: Sat Jul 28 13:42:21 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RKIDPSRGATLGDGSPNDMNRVEIGPTQLAFAEWHTARLDLPDLAAMRRFRHRRLTDHVVARGYAGLLMF
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Known secondary structure (DSSP)

S
SSSSSB
TTSSB

TT
S




TT




TT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence DPLNIRYATDSTNMQLWNTHNPFRATLLCADGYMVMWDYKNSPFLSEFNPLVREQRAGADLFYFDRGDKV
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Known secondary structure (DSSP) S


SSS


TTS


TT
GGGGTT
TTS





SGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence DVAADVFANEVRILLRDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCA
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Known secondary structure (DSSP) STT

SS

TT
TS

 .........220.........230.........240.........250.........260.........270.........280
Sequence SHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRSNPWFQECGPRVCQR
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Known secondary structure (DSSP) TTSS

BTTT

S


GGGGSSTT



S
B

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NEIISFDTDLVGAYGICTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSANTHVLD
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Known secondary structure (DSSP) S


GGG


SSS


T

TT
BT




 .........360.........370.........380.........390.........400.........410.........420
Sequence AKFQKQKYGCLMHGVGLCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEALISEEGGDFSIKLEDQVLITE
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Known secondary structure (DSSP) TT

S
SSSS

TTT

TTSS

B

TT

TT
S

S
 .........430.......
Sequence DGYENLTKYPFDPALMG
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Known secondary structure (DSSP) SS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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