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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4b0tB_

Fold library idPDB HeaderMoleculeTitle
c4b0tB_PDB header: ligaseChain: B: PDB Molecule: pup--protein ligase;PDBTitle: structure of the pup ligase pafa of the prokaryotic2 ubiquitin-like modification pathway in complex with adp


Added to library: Sat Sep 15 14:41:36 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence STVESALTRRIMGIETEYGLTFVDLRPDEIARRMFRPIVEKYSSSNIFIPNGSRLYLDVGSHPEYATAEC
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Known secondary structure (DSSP)

GGGS
SS
















S
S
TTS


TTS





 .........80.........90.........100.........110.........120.........130.........140
Sequence DNLTQLINFEKAGDVIADRMAVDAEESLAKEDIAGQVYLFKNNVDSVGNSYGCHENYLVGRSMPLKALGK
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Known secondary structure (DSSP) SSTT






B
SSB
TT

B



TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RLMPFLITRQLICGAGRIHHPNPLDKGESFPLGYCISQRSDHVWEGVSSATTRSRPIINTRDEPHADSHS
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TT
TT



SS
SSS
SSTT


S

S

SS
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YRRLHVIVGDANMAEPSIALKVGSTLLVLEMIEADFGLPSLELANDIASIREISRDATGSTLLSLKDGTT
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STT






BS
TTTT
TT


BTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence MTALQIQQVVFEHASKWLEQRPEPEFSGTSNTEMARVLDLWGRMLKAIESGDFSEVDTEIDWVIKKKLID
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SSSS

S

TTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RFIQRGNLGLDDPKLAQVDLTYHDIRPGRGLFSVLQSRGMIKRWTTDEAILAAVDTAPDTTRAHLRGRIL
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Known secondary structure (DSSP) T

TT
TTB
STTTST
S

SS
S

SSST
 .........430.........440.........450.........460.........470..
Sequence KAADTLGVPVTVDWMRHKVNRPEPQSVELGDPFSAVNSEVDQLIEYMTVHAE
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Known secondary structure (DSSP) T



SS
SSS



TT



T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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