PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4b0aA_

Fold library id	PDB Header	Molecule	Title
c4b0aA_	PDB header: transcription	Chain: A: PDB Molecule: transcription initiation factor tfiid subunit 1, linker,	PDBTitle: the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation

Links to external resources
Added to library: Sat Jul 6 08:26:47 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T N L A N E D E A Y E A I F G G E F G S L E I G S Y I G G D E A R N S K D Y T E H L P D A V D F E D E D E L A D D G I V P T L Q N I V A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S G G G G G G G G
S
T T
S S
T T
B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T L G C R L D L K T V A L H A R N A E Y N P K R F A A V I M R I R E P K T T A L I F A S G K M V V T G A K S E D D S K L A S R K Y A R I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B T T
T T T
S S T T T T
T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q K I G F A A K F T D F K I Q N I V G S C D V K F P I R L E G L A F S H G T F S S Y E P E L F P G L I Y R M V K P K I V L L I F V S G K I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
B
T T T T
T T T
S S
S S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence L T G A K Q R E E I Y Q A F E A I Y P V L S E F R K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	N	L	A	N	E	D	E	A	Y	E	A	I	F	G	G	E	F	G	S	L	E	I	G	S	Y	I	G	G	D	E	A	R	N	S	K	D	Y	T	E	H	L	P	D	A	V	D	F	E	D	E	D	E	L	A	D	D	G	I	V	P	T	L	Q	N	I	V	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S											S	S	S	G	G	G	G	G	G	G	G				S		T	T		S	S							T	T		B			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	L	G	C	R	L	D	L	K	T	V	A	L	H	A	R	N	A	E	Y	N	P	K	R	F	A	A	V	I	M	R	I	R	E	P	K	T	T	A	L	I	F	A	S	G	K	M	V	V	T	G	A	K	S	E	D	D	S	K	L	A	S	R	K	Y	A	R	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S											B	T	T					T	T	T		S	S						T	T	T	T							T	T	S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	K	I	G	F	A	A	K	F	T	D	F	K	I	Q	N	I	V	G	S	C	D	V	K	F	P	I	R	L	E	G	L	A	F	S	H	G	T	F	S	S	Y	E	P	E	L	F	P	G	L	I	Y	R	M	V	K	P	K	I	V	L	L	I	F	V	S	G	K	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T																				S	S		B									T	T	T	T					T	T	T		S	S						S	S	S								T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	L	T	G	A	K	Q	R	E	E	I	Y	Q	A	F	E	A	I	Y	P	V	L	S	E	F	R	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S																		T	B