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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4asmB_

Fold library idPDB HeaderMoleculeTitle
c4asmB_PDB header: hydrolaseChain: B: PDB Molecule: beta-agarase d;PDBTitle: crystal structure of the catalytic domain of beta-agarase d2 from zobellia galactanivorans


Added to library: Sat Jul 28 13:31:59 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QYDWDNVPIPANAGAGKTWKLQTAASDDFNYTFNPTNNVVDFGPNGNMKWYNKYHNRPNGQPNNFEGPGP
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Known secondary structure (DSSP)

TTTTS


S


TT

TTT
B


S
B


SS


STT


SSS


TTS






STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TKWMQNHVAVSGGNLNIWASRIPGATKSFTGSNNTPISRPETRAGCITNKTRVKYPVFVEARVKVMNSTL
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Known secondary structure (DSSP)
TTSTT

TT

TTSS

SS
B
SS

SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ASDIWLLSPDDTQEIDIMECYGGPGNDNRNSYFASKIHLSHHVFIRPPNFKDYQPADLNSWWGKNGVTQW
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Known secondary structure (DSSP)
TTSS




TT
TTT



TTS



BGGG

TT
S

 .........220.........230.........240.........250.........260.........270.........280
Sequence GGKTIRIGVNWVSPTRLEYFVDGQMVRILDNDAVQTRLADGTWQYTYPAGVTSTGVNGQLIKENGYQKMN
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Known secondary structure (DSSP) TT
TTTTTT
TTS


BS
SSTT

B
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IASSLSDAKNKSNISVIDPFNYLNNGRKFSKEMDIIINVEDQSWQAEAYRSPNAAEMANFYDNNLLVDWI
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Known secondary structure (DSSP) SS

S
SS
TT
TT
SSSS

S
B

TT
S

T
GGGG
 .......
Sequence RVYKPVN
Predicted secondary structure


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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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