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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4alzA_

Fold library idPDB HeaderMoleculeTitle
c4alzA_PDB header: membrane proteinChain: A: PDB Molecule: yop proteins translocation protein d;PDBTitle: the yersinia t3ss basal body component yscd reveals a different2 structural periplasmatic domain organization to known homologue prgh


Added to library: Sat Apr 27 08:22:10 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QLVEQEVRRLLATAAYKDVVLTSPKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGA
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Known secondary structure (DSSP)
TSGGGTT


TTS
SSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence EFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVENKVRIAPNQRKRLDALL
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Known secondary structure (DSSP) TT

S
SSTT
TT
STT






 .........150.........160.........170.........180.........190....
Sequence EQFGLDSDFTVNVKGELIELRGQVNDEKLSSFNQLQQTFRQEFGNRPKLELVNV
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Known secondary structure (DSSP) TT
TTT
TT


TTSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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