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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4akgB_

Fold library idPDB HeaderMoleculeTitle
c4akgB_PDB header: motor proteinChain: B: PDB Molecule: glutathione s-transferase class-mu 26 kda isozyme, dyneinPDBTitle: dynein motor domain - atp complex


Added to library: Sat Mar 17 12:40:59 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAI
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Known secondary structure (DSSP)

SS
GGGT



TT
TTSS

SS

SSSSS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKT
Predicted secondary structure








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Known secondary structure (DSSP) TTT
S
SSTTSSTTTTT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFG
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Known secondary structure (DSSP) BTTBSS


TTTTTT
STSTT




SS
TTSSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GGDHPPFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDC
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Known secondary structure (DSSP)
SSS


TS



SSS

TGGGSSS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIE
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Known secondary structure (DSSP) TTS



SGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence VIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGS
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Known secondary structure (DSSP) GGGSTTSTT
TTTTSGGGSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence IESIIFLEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEV
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Known secondary structure (DSSP)
SSTTS


SS

TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence VVSKYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHF
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Known secondary structure (DSSP) TTS
T
T

 .........570.........580.........590.........600.........610.........620.........630
Sequence NNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIG
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Known secondary structure (DSSP)
SSS

SS
SSGGG
TT






S






 .........640.........650.........660.........670.........680.........690.........700
Sequence FATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFD
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Known secondary structure (DSSP) TT


TTS
TTT


TTSS

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence EFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFRE
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Known secondary structure (DSSP) TTT


T
S
SSS

TT



SSSS



TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence FSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG
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Known secondary structure (DSSP)





SSS


TT


SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCM
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Known secondary structure (DSSP) SSTGGG





S

SSSST



 .........920.........930.........940.........950.........960.........970.........980
Sequence QFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDG
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Known secondary structure (DSSP)
S

TTSST



TTTS
TTTTTT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDN
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Known secondary structure (DSSP) STTTTT


SS
SSS
S


TTSTT

SSS


SS
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTC
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Known secondary structure (DSSP)
TTS
S

S
SS
TTS


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SNDLVHILGVRTFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAF
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Known secondary structure (DSSP) SS

SS


T
GGGSS

TTS
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence IQTINTYFGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLL
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Known secondary structure (DSSP) S
SSS



TT


B

SSS


B











SGGGS
TT




 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD
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Known secondary structure (DSSP) T


TTSS
SS


TT

TTB

TTT
BSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE
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Known secondary structure (DSSP) SS
TTT
S


SSS

TS
TTT


S

TTSTT




 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFS
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Known secondary structure (DSSP) TT



TTTTTS
GGGGGGS
TTT
TT



 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence PRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGN
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Known secondary structure (DSSP) TSS


TTT

SSS

SS


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence ISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMML
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Known secondary structure (DSSP)
STTT

SSSSSS


S







SSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence IGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFL
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Known secondary structure (DSSP)
TTTS
TT





TT

SS


TTT

S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence ERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNK
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Known secondary structure (DSSP) SSS
TTTS
TT



S
S
TTS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence SSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFTIRDAVVNILIHFDRNFYQKMKVGV
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Known secondary structure (DSSP)
S

S

S
S








T

SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence NPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVKSLTFEKERWLNTTKQFSKTSQELIG
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Known secondary structure (DSSP) S


SS

TTTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence NCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLE
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Known secondary structure (DSSP) TTT

TT



SS



T

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence NMSIVMNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQDGEFFDPII
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Known secondary structure (DSSP)

SS

SSTTGGG
TTSTTTT
S
SSS

STT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDI
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Known secondary structure (DSSP) TT


SS

SSS

SS
S
TTS


S



S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence TLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLS
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Known secondary structure (DSSP)
SSSS
TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence ESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRVFITRVDEILWLLYQEV
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Known secondary structure (DSSP)
TT



TT

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence YCQFSTALDKKFKMIMAMTMFCLYKFDIESEQYKEAVLTMIGVLSESSDGVPKLTVDTNNDLRYLWDYVT
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Known secondary structure (DSSP) STTS
S
TTS







TTT
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence TKSYISALNWFKNEFFVDEWNIADVVANSDNNYFTMASERDVDGTFKLIELAKASKESLKIIPLGSIENL
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Known secondary structure (DSSP) TT
TTT







S
TT

TTTT





S
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence NYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRT
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Known secondary structure (DSSP) T

TGGGGT
SSTTTS
S

SSS



S
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence DRFVYEDIPGILDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQ
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Known secondary structure (DSSP)





GGGG


S
STTTTSSS




 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence FASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCGSDNLQIVPGVRIPQP
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Known secondary structure (DSSP) S
SSSTTTTSTTT

ST

SSB

SSSS


B

 .........2600.........2610.........2620.........2630.........2640.........2650
Sequence LLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRESILNYERLQAKEVASSTEQLLQEM
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Known secondary structure (DSSP)
TT





TTTSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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