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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4acrB_

Fold library idPDB HeaderMoleculeTitle
c4acrB_PDB header: membrane proteinChain: B: PDB Molecule: glypican-1;PDBTitle: crystal structure of n-glycosylated, c-terminally truncated2 human glypican-1


Added to library: Sat Feb 25 11:31:28 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SRSCGEVRQIYGAKGFSLSDVPQAEISGEHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQA
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Known secondary structure (DSSP)

B
TT

GGGS
SB
B

TT
SSS
SSSBS

 .........80.........90.........100.........110.........120.........130.........140
Sequence MLATQLRSFDDHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWA
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Known secondary structure (DSSP) S
TTTTS



 .........150.........160.........170.........180.........190.........200.........210
Sequence RLLERLFKQLHPQLLLPDDYLDCLGKQAEALRPFGEAPRELRLRATRAFVAARSFVQGLGVASDVVRKVA
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Known secondary structure (DSSP)
SSS


SS
TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QVPLGPECSRAVMKLVYCAHCLGVPGARPCPDYCRNVLKGCLANQADLDAEWRNLLDSMVLITDKFWGTS
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Known secondary structure (DSSP) T



TTTT
TT

B
STTGGGGGSSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GVESVIGSVHTWLAEAINALQDNRDTLTAKVIQGCGNPKVGKLAPRERPPSGTLEKLVSEAKAQLRDVQD
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Known secondary structure (DSSP) STTT












SS
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence FWISLPGTLCSERCWNGMARGRYLPEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNRLRSAY
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Known secondary structure (DSSP)


B
SSSBS


S



SSSGGGTT
SSS


TT


 ....
Sequence NGND
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SS confidence



Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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