Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4acoA_

Fold library idPDB HeaderMoleculeTitle
c4acoA_PDB header: dna binding proteinChain: A: PDB Molecule: centromere dna-binding protein complex cbf3 subunit a;PDBTitle: structure of the budding yeast ndc10 n-terminal domain


Added to library: Sat Jan 14 21:29:44 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QYKTYYTKYIQWCQLNQIIPTPSVPYKDLPISAELIHWFLLDTLITDDEDLDEEEENSFKIATLKKIIGS
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
TTSS





TTT



TTT



 .........80.........90.........100.........110.........120.........130.........140
Sequence LNFLSKLCKVHENPNANIDTKYLESVTKLHTHWIDSQKAICPPLLKVSLNLWNPETNHLSEKFFKTCSEK
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT
SS







S

TTT
TTT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LRFLVDFQLRSYLNLSFEERSKIRFGSLKLGKRDRDAIIYHKVTHSPGHHQLLALLPQDCPFICPQTTLA
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)


TT
BGGG
SS
TT







SSGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence AYLYLRFYGIPSVSKGDGFPNLNADENGSLLQDIPILRGKSLTTYPREETFSNYYTTVFRYCHLPYKRRE
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
BTTTB



S

GGG
STTTTGGGSBSS

SSTTS


TT



T
 .........290.........300.........310.........320.........330.........340.........350
Sequence YFNKCNLVYPTWDEDTFRTFFNEENHGNWLEQPEAFAFPDKIPFDFKKIMNFKSPYTDPFPPPKDLLVQI
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) S

SS


T
GGGGTT
SS
GGGTTSGGGS
TT

TT


S


TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FPEIDEYKRHDYEGLSQNSRDFLDLMEVLRERFLSNLPWIYKFFPNHDIFQDPIFGNSDFQSYFNDKTIH
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) STSSGGGS

TTSGGGGSGGGGSGG
 .........430.........440.........450..
Sequence SKGSPILSFDILPGFNKIYKNKTNFYSLLIER
Predicted secondary structure












SS confidence































Known secondary structure (DSSP) GTT
SB
SS


TTTSBTT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D