PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4a7xF_

Fold library id	PDB Header	Molecule	Title
c4a7xF_	PDB header: transferase	Chain: F: PDB Molecule: uridylate kinase;	PDBTitle: crystal structure of uridylate kinase from helicobacter pylori

Links to external resources
Added to library: Sat Jun 30 13:36:44 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N K R V L V K F S G E A L A G D N Q F G I D I H V L D H I A K E I K S L V E N D I E V G I V I G G G N I I R G V S A A Q G G I I R R T S G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T T S S S S
T T T
T T T S
S T T T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y M G M L A T V I N A V A M Q E A L E H I G L D T R V Q S A I E I K E I C E S Y I Y R K A I R H L E K G R V V I F G A G T G N P F F T T D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T T S
T T
T T T S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A T L R A I E I G S D L I I K A T K V D G I Y D K D K D A K K L D T L S Y N D A L I G D I E V M D D T A I S L A K D N K L P I V V C N M F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S S S
S
S S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence K K G N L L Q V I K H Q Q G V F S M V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	K	R	V	L	V	K	F	S	G	E	A	L	A	G	D	N	Q	F	G	I	D	I	H	V	L	D	H	I	A	K	E	I	K	S	L	V	E	N	D	I	E	V	G	I	V	I	G	G	G	N	I	I	R	G	V	S	A	A	Q	G	G	I	I	R	R	T	S	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G	G	T	T	T	S	S	S	S																		T	T	T										T	T	T	S		S	T	T	T	T		T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	M	G	M	L	A	T	V	I	N	A	V	A	M	Q	E	A	L	E	H	I	G	L	D	T	R	V	Q	S	A	I	E	I	K	E	I	C	E	S	Y	I	Y	R	K	A	I	R	H	L	E	K	G	R	V	V	I	F	G	A	G	T	G	N	P	F	F	T	T	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T								S	S			T	T	T	S														T	T							T	T	T	S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	T	L	R	A	I	E	I	G	S	D	L	I	I	K	A	T	K	V	D	G	I	Y	D	K	D	K	D	A	K	K	L	D	T	L	S	Y	N	D	A	L	I	G	D	I	E	V	M	D	D	T	A	I	S	L	A	K	D	N	K	L	P	I	V	V	C	N	M	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T		S							S	S	S	S			S																			S				S	S											T	T									S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	K	K	G	N	L	L	Q	V	I	K	H	Q	Q	G	V	F	S	M	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T									S		S	S