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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4a27A_

Fold library idPDB HeaderMoleculeTitle
c4a27A_PDB header: oxidoreductaseChain: A: PDB Molecule: synaptic vesicle membrane protein vat-1 homolog-like;PDBTitle: crystal structure of human synaptic vesicle membrane2 protein vat-1 homolog-like protein


Added to library: Wed Jan 9 16:48:51 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSG
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Known secondary structure (DSSP)



SSSSGGG





TT
T
SSS


SSB


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANL
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Known secondary structure (DSSP)
TT

S

TT

SS

SBSGGG

TTS
TSTTS

 .........150.........160.........170.........180.........190.........200.........210
Sequence REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVD
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Known secondary structure (DSSP)
TT
SSTTSTTSTT

GGGGGGSSTTS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IVLDCLCLSLLKPLGTYILYGNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPV
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Known secondary structure (DSSP)


TT

T

TS

TTS



 .........290.........300.........310....
Sequence VDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTP
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Known secondary structure (DSSP)
GGGTT

SSTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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