PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3zw6B_

Fold library id	PDB Header	Molecule	Title
c3zw6B_	PDB header: photosynthesis	Chain: B: PDB Molecule: ribulose bisphosphate carboxylase/oxygenase activase 1,	PDBTitle: model of hexameric aaa domain arrangement of green-type2 rubisco activase from tobacco.

Links to external resources
Added to library: Wed Jan 9 14:51:20 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N L D N K L D G F Y I A P A F M D K L V V H I T K N F L K L P N I K V P L I L G I W G G K G Q G K S F Q C E L V F R K M G I N P I M M S A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
S
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E L E S G E P A K L I R Q R Y R E A A E I I R K G N M C C L F I N D L D N N Q M V N A T L M N I A D N P T E N A R V P I I V T G N D F S T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P L I R D G R M E K F Y W A P T R E D R I G V C T G I F R T D N V P A E D V V K I V D N F P G Q S I D F F G A L R A R V Y D D E V R K W V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . .

Sequence G T G I E K I G D K L L N S F D G P P T F E Q P K M T I E K L L E Y G N M L V Q E Q E N V K R V Q L A D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
T S
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	L	D	N	K	L	D	G	F	Y	I	A	P	A	F	M	D	K	L	V	V	H	I	T	K	N	F	L	K	L	P	N	I	K	V	P	L	I	L	G	I	W	G	G	K	G	Q	G	K	S	F	Q	C	E	L	V	F	R	K	M	G	I	N	P	I	M	M	S	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																		T	T	S			T	T					S								T	T	S														T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	L	E	S	G	E	P	A	K	L	I	R	Q	R	Y	R	E	A	A	E	I	I	R	K	G	N	M	C	C	L	F	I	N	D	L	D	N	N	Q	M	V	N	A	T	L	M	N	I	A	D	N	P	T	E	N	A	R	V	P	I	I	V	T	G	N	D	F	S	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T	S	S																																							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	L	I	R	D	G	R	M	E	K	F	Y	W	A	P	T	R	E	D	R	I	G	V	C	T	G	I	F	R	T	D	N	V	P	A	E	D	V	V	K	I	V	D	N	F	P	G	Q	S	I	D	F	F	G	A	L	R	A	R	V	Y	D	D	E	V	R	K	W	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													G	G	G														S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence	G	T	G	I	E	K	I	G	D	K	L	L	N	S	F	D	G	P	P	T	F	E	Q	P	K	M	T	I	E	K	L	L	E	Y	G	N	M	L	V	Q	E	Q	E	N	V	K	R	V	Q	L	A	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T		S	T	T						T	S		S	S		S