PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3zoqA_

Fold library id	PDB Header	Molecule	Title
c3zoqA_	PDB header: hydrolase/viral protein	Chain: A: PDB Molecule: uracil-dna glycosylase;	PDBTitle: structure of bsudg-p56 complex

Links to external resources
Added to library: Sat May 25 08:38:18 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q L L Q D S W W N Q L K E E F E K P Y Y Q E L R E M L K R E Y A E Q T I Y P D S R D I F N A L H Y T S Y D D V K V V I L G Q D P Y H G P G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S S
S
G G G T T S
T T T
B
S
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q G L S F S V K P G V K Q P P S L K N I F L E L Q Q D I G C S I P N H G S L V S W A K Q G V L L L N T V L T V R R G Q A N S H K G K G W E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T S
T
S S
T T
B S S
T T B T T T T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R L T D R I I D V L S E R E R P V I F I L W G R H A Q M K K E R I D T S K H F I I E S T H P S P F S A R N G F F G S R P F S R A N A Y L E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S G G G G G S
T T T
S S T T T G G G T T T T

. . . . . . . . . 220 . . .

Sequence M G E A P I D W C I K D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	L	L	Q	D	S	W	W	N	Q	L	K	E	E	F	E	K	P	Y	Y	Q	E	L	R	E	M	L	K	R	E	Y	A	E	Q	T	I	Y	P	D	S	R	D	I	F	N	A	L	H	Y	T	S	Y	D	D	V	K	V	V	I	L	G	Q	D	P	Y	H	G	P	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S													T	S																	S				S		G	G	G	T	T						S		T	T	T							B		S				S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	G	L	S	F	S	V	K	P	G	V	K	Q	P	P	S	L	K	N	I	F	L	E	L	Q	Q	D	I	G	C	S	I	P	N	H	G	S	L	V	S	W	A	K	Q	G	V	L	L	L	N	T	V	L	T	V	R	R	G	Q	A	N	S	H	K	G	K	G	W	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S	S				T	T	S																	T						S	S									T	T					B	S	S					T	T	B	T	T	T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	L	T	D	R	I	I	D	V	L	S	E	R	E	R	P	V	I	F	I	L	W	G	R	H	A	Q	M	K	K	E	R	I	D	T	S	K	H	F	I	I	E	S	T	H	P	S	P	F	S	A	R	N	G	F	F	G	S	R	P	F	S	R	A	N	A	Y	L	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S								S					G	G	G	G	G	S		T	T	T									S	S	T	T	T	G	G	G	T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	M	G	E	A	P	I	D	W	C	I	K	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T