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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3zl8A_

Fold library idPDB HeaderMoleculeTitle
c3zl8A_PDB header: ligaseChain: A: PDB Molecule: udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alaninePDBTitle: crystal structure of murf ligase from thermotoga maritima2 in complex with adp


Added to library: Sat Sep 14 08:45:40 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKDLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDRIFLVESSVDTLA
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Known secondary structure (DSSP)

GGGGS
SSGGG

TT


B
SS
BGGGGTT
SSS

S

TT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNMNTEYGLPLSILNDYKGEEILVLE
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Known secondary structure (DSSP) TTS


SS
TTTS


TT

TTT



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence MAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTRERIMETKMEIIKHSKENAIAVTLFDDPDLRKEV
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Known secondary structure (DSSP)


SSTTS

S


TTTT
STTS
TT
TTSG
 .........220.........230.........240.........250.........260.........270.........280
Sequence PRYRNTLFFGKEGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSGYWNGGQLLNIAASLCVMRTLGETVD
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Known secondary structure (DSSP) GGTSSSSSSTTTTS


TT



 .........290.........300.........310.........320.........330.........340.........350
Sequence IFDLASLKTVPGRFNVREKKGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGAMKELGERSKEFHEE
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Known secondary structure (DSSP) T



TTSSTT
S


TTSSS




S
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence LGERLNVLDGVYVFLSEPEAEWIKSKKIILKSDDPEKIAKDLATRVKKGDVVLFKASRAVRIERVLEMFE
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Known secondary structure (DSSP) TTSS
SSGGGGG


TTS
TT

TT


GGG
T
 .......
Sequence KELEKRA
Predicted secondary structure


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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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