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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3zheD_

Fold library idPDB HeaderMoleculeTitle
c3zheD_PDB header: mrna-binding proteinChain: D: PDB Molecule: protein smg-7;PDBTitle: structure of the c. elegans smg5-smg7 complex


Added to library: Sat Feb 9 15:41:34 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEWEQLTVELRKIPRGTEAAPQYLRHLMKMFVADFETAVSKRFDVKFWNKLKSMMDEITKAMERLVNHNV
Predicted secondary structure











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Known secondary structure (DSSP)
S

SSSS
TTS


 .........80.........90.........100.........110.........120.........130.........140
Sequence QNLAIGFLTDLSLLVHYHYEIPNYGNDISKQLTWTPDVFLNRKPIKSKKNSRVFMAYVLLRMGDLMRYKE
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Known secondary structure (DSSP) B





TTS
GGGT

GGG

S
B

S
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHTRALHATMEFPTASGGLTNIFKNFANR
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Known secondary structure (DSSP)

TT
TT
TSSS

TTTTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DISRPMPIKDLYLSCLGRIHFLLEIEDSSVHLQKIGEEAATSKEMIVPLMSVYKHLEDGTELEQRAVEYV
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Known secondary structure (DSSP)
TTS


TT


SS
TS

S

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KTIWCTAYRSLLKTLDDYKEESKKLADVPHLLHILALLLCAPKLLRGIEDQTEDEVTSICEWLLCANCDE
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Known secondary structure (DSSP) TT

GGG
T
TT
S
SS
S
 .........360.........370.........380.......
Sequence KIKDSDAFGYFHCLQRIQYPLTRTQLAQKLVEIEDED
Predicted secondary structure






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Known secondary structure (DSSP)
B

SS
TTS

TT



SSB
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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