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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3zheC_

Fold library idPDB HeaderMoleculeTitle
c3zheC_PDB header: mrna-binding proteinChain: C: PDB Molecule: nonsense-mediated mrna decay protein;PDBTitle: structure of the c. elegans smg5-smg7 complex


Added to library: Sat Feb 9 15:39:00 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEVTEKFKRYCNQLEKYGQTENVHSPVMAMLRRKGRKQLIEIMKRDGDCTSSINKLWIVGYYHPFQFFIR
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Known secondary structure (DSSP)
TTTS
TT
SSS

TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DAIAVLLTMFCGELQEMLSLPDDKYPALWNMYIGDFHRYMPDEEIQKCLAVGYYSRAIDLDPNQGRAFHV
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Known secondary structure (DSSP)

STT
S
S
TT
GGGT
TTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence LAGLRADLNVAQKLRLMILGQLADAPYKKGTELLEYLKFPQKESTDKLMVDFVIWALNEKSKRMDYQMTG
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Known secondary structure (DSSP)

S

SSB

STTS

SS
S

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IKIVNEFKAEIEQKLEFDWSLIMSTCRLASKLAMKKFGFQQFYNCFDTISTLYITIYSRSSKCLLAEAIS
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Known secondary structure (DSSP) S




T



 .........290.........300.........310.........320.........330.........340.........350
Sequence WISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVMNHINSVFTSMSLTINPSISMTSFLLNGPIS
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Known secondary structure (DSSP) S

SSSS

SGGG

TTS
S

SS



S
S
S
 .........360.........370.........380........
Sequence EPNVEFLSQLINYLVSVEFPPMEIIHDREESGPLLRRI
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Known secondary structure (DSSP)


TSSS
S
SS
SSS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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