PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3zf7x_

Fold library id	PDB Header	Molecule	Title
c3zf7x_	PDB header: ribosome	Chain: X: PDB Molecule: 60s ribosomal protein l23a;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 09:11:50 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P S P F V A R P K D F G I G R D V P Y A R D L S R F M R W P T F V T M Q R K K R V L Q R R L K V P P A L N Q F T K V L D R S S R N E L L K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S
S
G G G
S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V K K Y A P E T R K A R R D R L T K V A E E K K K N P K G T V S T K A P L C V V S G L Q E V T R T I E K K T A R L V L I A N N V D P I E L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T T T
S
T T
S S
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L W M P T L C R A N K I P Y A I V K D K A R L G D A I G R K T A T C V A F T D V N A E D Q A A L K N L T R S V N A R F L A R S D V I R R Q W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T S S S
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G G L Q L S L R S R A E L R K K R A R T A G N D A A A K A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T S S S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	S	P	F	V	A	R	P	K	D	F	G	I	G	R	D	V	P	Y	A	R	D	L	S	R	F	M	R	W	P	T	F	V	T	M	Q	R	K	K	R	V	L	Q	R	R	L	K	V	P	P	A	L	N	Q	F	T	K	V	L	D	R	S	S	R	N	E	L	L	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									S	S	S	S				S					G	G	G																				S								T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	K	K	Y	A	P	E	T	R	K	A	R	R	D	R	L	T	K	V	A	E	E	K	K	K	N	P	K	G	T	V	S	T	K	A	P	L	C	V	V	S	G	L	Q	E	V	T	R	T	I	E	K	K	T	A	R	L	V	L	I	A	N	N	V	D	P	I	E	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T					T														T	T	T	T	T			S																						T	T			S						S			S		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	W	M	P	T	L	C	R	A	N	K	I	P	Y	A	I	V	K	D	K	A	R	L	G	D	A	I	G	R	K	T	A	T	C	V	A	F	T	D	V	N	A	E	D	Q	A	A	L	K	N	L	T	R	S	V	N	A	R	F	L	A	R	S	D	V	I	R	R	Q	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									S							T	T	S	S	S							S																					T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	G	G	L	Q	L	S	L	R	S	R	A	E	L	R	K	K	R	A	R	T	A	G	N	D	A	A	A	K	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T	T	T	T	S	S	S	S	S	S