PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3zf7w_

Fold library id	PDB Header	Molecule	Title
c3zf7w_	PDB header: ribosome	Chain: W: PDB Molecule: 60s ribosomal protein l23, putative;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 08:45:52 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M F M T G L I L L G K G R E V M P A K A V P A P E S A I K R A A F K Q Q Q T E N F K K A I A A N K V A A A A L K K L A Y S R G L K Y S R E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T S
S
S S
S
S T T T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R S T E K K L A G L R R N A R Q H G N Y Y L E A K P K V A V V T R I R G I A K V P P K Q R K I L Q L L R L R Q I F N T V F V R L N K P M E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
T T
T
S T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M L R A V E P Y I A Y G Y P S L S T V R A M V Y K R G H L K I N G Q R V K I T D N Q M I K D K Y H N D D I V C A E D I V N Q I Y A C G K H F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G
S
S S S
G G G T
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . .

Sequence R T V T N G L W P F K L A P P A G G M R Q K R R H F V E G G D Y G N R D T L I N R F L A R M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S S
T T S
B S T T S S B B T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	F	M	T	G	L	I	L	L	G	K	G	R	E	V	M	P	A	K	A	V	P	A	P	E	S	A	I	K	R	A	A	F	K	Q	Q	Q	T	E	N	F	K	K	A	I	A	A	N	K	V	A	A	A	A	L	K	K	L	A	Y	S	R	G	L	K	Y	S	R	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S				S				T	T			S					S			S	S		S		S					T					T	T	T			T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	S	T	E	K	K	L	A	G	L	R	R	N	A	R	Q	H	G	N	Y	Y	L	E	A	K	P	K	V	A	V	V	T	R	I	R	G	I	A	K	V	P	P	K	Q	R	K	I	L	Q	L	L	R	L	R	Q	I	F	N	T	V	F	V	R	L	N	K	P	M	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T									S								S			T	T													T			S	T	T								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	L	R	A	V	E	P	Y	I	A	Y	G	Y	P	S	L	S	T	V	R	A	M	V	Y	K	R	G	H	L	K	I	N	G	Q	R	V	K	I	T	D	N	Q	M	I	K	D	K	Y	H	N	D	D	I	V	C	A	E	D	I	V	N	Q	I	Y	A	C	G	K	H	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	G	G	G																		S					S	S	S																G	G	G	T			S										S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Sequence	R	T	V	T	N	G	L	W	P	F	K	L	A	P	P	A	G	G	M	R	Q	K	R	R	H	F	V	E	G	G	D	Y	G	N	R	D	T	L	I	N	R	F	L	A	R	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							B									S	S				T	T	S		B	S	T	T	S	S	B	B					T