PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3zf7O_

Fold library id	PDB Header	Molecule	Title
c3zf7O_	PDB header: ribosome	Chain: O: PDB Molecule: 60s ribosomal protein l13a, putative;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 08:35:00 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P D I I V I D L K D H V L G R A A A I V A K Q L L L G K K I T V V R C E K L T I A G S E I R N K I K Y L Q F L R K R K L S N P K L G P F H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
B
G G G
S
T T
G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R S P S D V F I R T V R S M L P R Y T K R G Q R A L R Q L V A Y E G V P V N V V R T G G R V V I P K A Q R H N C Y R N E R R F T V L G N M C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
T T
S S
T T
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence K H V G W K Y S D V V E K L E A A R I E K S G R H H K K M E K V R V A W K N A R K E A L K K M P Q K N V E V L K K F G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
S S
S
T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	D	I	I	V	I	D	L	K	D	H	V	L	G	R	A	A	A	I	V	A	K	Q	L	L	L	G	K	K	I	T	V	V	R	C	E	K	L	T	I	A	G	S	E	I	R	N	K	I	K	Y	L	Q	F	L	R	K	R	K	L	S	N	P	K	L	G	P	F	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						T	T		B																							G	G	G					S																		T	T		G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	S	P	S	D	V	F	I	R	T	V	R	S	M	L	P	R	Y	T	K	R	G	Q	R	A	L	R	Q	L	V	A	Y	E	G	V	P	V	N	V	V	R	T	G	G	R	V	V	I	P	K	A	Q	R	H	N	C	Y	R	N	E	R	R	F	T	V	L	G	N	M	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S		T	T															S	S				T	T		S	S							T	T							S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	K	H	V	G	W	K	Y	S	D	V	V	E	K	L	E	A	A	R	I	E	K	S	G	R	H	H	K	K	M	E	K	V	R	V	A	W	K	N	A	R	K	E	A	L	K	K	M	P	Q	K	N	V	E	V	L	K	K	F	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T			T	T																																S			S	S		S					T	T								T