PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3zf7J_

Fold library id	PDB Header	Molecule	Title
c3zf7J_	PDB header: ribosome	Chain: J: PDB Molecule: ribosomal protein;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 08:38:52 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S K I P P A L L S E A I Q N V L K D R K E R K F K E S I D L Q V N L K N Y D P Q K D K R F S G S V R L P H V C R P R M T V C L L C D L V H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S
S S
G G G
T T
S
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E D I A K K N D V P T M N Q E E L K K L N K N K K L V K K M C N Q Y D A F L C S E S I I K T V P R L V G P H M H R V G K F P T V C A Q N E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T S
S G G G T T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P D K V L E L Q S T V K F Q L K K V L C L G T C V G H V D M T E D Q V R Q N V V M A I N F L V S L L K K N W Q N L K S A Y I K S T M G K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
T T G G G
T T
S
T T S
T T
T T T T T T T T S

. . . .

Sequence Q R I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	K	I	P	P	A	L	L	S	E	A	I	Q	N	V	L	K	D	R	K	E	R	K	F	K	E	S	I	D	L	Q	V	N	L	K	N	Y	D	P	Q	K	D	K	R	F	S	G	S	V	R	L	P	H	V	C	R	P	R	M	T	V	C	L	L	C	D	L	V	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	S											S				S	S															G	G	G											T	T		S										S	S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	D	I	A	K	K	N	D	V	P	T	M	N	Q	E	E	L	K	K	L	N	K	N	K	K	L	V	K	K	M	C	N	Q	Y	D	A	F	L	C	S	E	S	I	I	K	T	V	P	R	L	V	G	P	H	M	H	R	V	G	K	F	P	T	V	C	A	Q	N	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T			B										T	S													S						G	G	G	T	T						T								T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	D	K	V	L	E	L	Q	S	T	V	K	F	Q	L	K	K	V	L	C	L	G	T	C	V	G	H	V	D	M	T	E	D	Q	V	R	Q	N	V	V	M	A	I	N	F	L	V	S	L	L	K	K	N	W	Q	N	L	K	S	A	Y	I	K	S	T	M	G	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	T		T	T	G	G	G							T	T		S									T	T	S																		T	T		T	T	T	T	T	T									T	T	S
	.	.	.	.
Sequence	Q	R	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)