PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3zeyX_

Fold library id	PDB Header	Molecule	Title
c3zeyX_	PDB header: ribosome	Chain: X: PDB Molecule: 40s ribosomal protein s3, putative;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 08:41:01 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L S K K R M M V R D G V F Y A E L F E F L K R E L A D D G F A G V E H R V T P T R T E I V I R S T K T R E V L G E K G R R I R E L T A C L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T T T T
S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q Q R F N Y K E G K L Q L F A E R V E V R G L S A M A Q A E S L R F K L L S N L Q V R R A A M G I I R Y V M E S G A K G C E V T I G G K I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S G G G
T T
T T
S S B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence G Q R A K S M T F R D G Y M I K S G T A H K H F V D T A T R H C H L R A G T I G V N V K I M R P Q S M I E E D E V L P D V I T V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
B
S S
S S S
S
T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	S	K	K	R	M	M	V	R	D	G	V	F	Y	A	E	L	F	E	F	L	K	R	E	L	A	D	D	G	F	A	G	V	E	H	R	V	T	P	T	R	T	E	I	V	I	R	S	T	K	T	R	E	V	L	G	E	K	G	R	R	I	R	E	L	T	A	C	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										G	G	G	G	T										T	T									T	T							S	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	Q	R	F	N	Y	K	E	G	K	L	Q	L	F	A	E	R	V	E	V	R	G	L	S	A	M	A	Q	A	E	S	L	R	F	K	L	L	S	N	L	Q	V	R	R	A	A	M	G	I	I	R	Y	V	M	E	S	G	A	K	G	C	E	V	T	I	G	G	K	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T			S	S	S										S	G	G	G															T	T																	T	T		S								S	B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	G	Q	R	A	K	S	M	T	F	R	D	G	Y	M	I	K	S	G	T	A	H	K	H	F	V	D	T	A	T	R	H	C	H	L	R	A	G	T	I	G	V	N	V	K	I	M	R	P	Q	S	M	I	E	E	D	E	V	L	P	D	V	I	T	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		B													S	S																	S	S	S												S			T	T	S					T	T