PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3zey3_

Fold library id	PDB Header	Molecule	Title
c3zey3_	PDB header: ribosome	Chain: 3: PDB Molecule: 40s ribosomal protein s6;	PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Links to external resources
Added to library: Sat Feb 16 08:39:09 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K L N V A Y P R N G T V K Q V E V T D E V L R R V N L G D Y R L G N E V D G A I F G E A F R G Y T F K L R G G S D K E G F P M V Q G V M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T T T
S S S G G G T
G G G S S
S S
B S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S R V S L L V K R G A V G F N T F R G Y Q G E R R R K S L R G C I L G S D I A V L N V T V E K V G E Q P I E G V T D V S V P R R L G P K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S S
S S
S S
T T
S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A N K I R K L F N L G R T D D V R K Y V I R R K V T K E G K K D R F K A P K I Q R L I T S T I R A R R A K K V R V A I D K V R K S A A E R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T
S T T
S
B
T T
B
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence E Y L R L V G A R R R A A R Q R K A A R H H S S R V N A Q R K E V D A F K A R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	L	N	V	A	Y	P	R	N	G	T	V	K	Q	V	E	V	T	D	E	V	L	R	R	V	N	L	G	D	Y	R	L	G	N	E	V	D	G	A	I	F	G	E	A	F	R	G	Y	T	F	K	L	R	G	G	S	D	K	E	G	F	P	M	V	Q	G	V	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T														T	T	T	T					S	S	S				G	G	G	T		G	G	G	S	S											S	S			B			S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	R	V	S	L	L	V	K	R	G	A	V	G	F	N	T	F	R	G	Y	Q	G	E	R	R	R	K	S	L	R	G	C	I	L	G	S	D	I	A	V	L	N	V	T	V	E	K	V	G	E	Q	P	I	E	G	V	T	D	V	S	V	P	R	R	L	G	P	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								S	S		S	S	S					S	S												S	S			T	T													S	S																		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	N	K	I	R	K	L	F	N	L	G	R	T	D	D	V	R	K	Y	V	I	R	R	K	V	T	K	E	G	K	K	D	R	F	K	A	P	K	I	Q	R	L	I	T	S	T	I	R	A	R	R	A	K	K	V	R	V	A	I	D	K	V	R	K	S	A	A	E	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T		T	T	T	T		S	T	T		S			B					T	T						B					B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	E	Y	L	R	L	V	G	A	R	R	R	A	A	R	Q	R	K	A	A	R	H	H	S	S	R	V	N	A	Q	R	K	E	V	D	A	F	K	A	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)