PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3wy7D_

Fold library id	PDB Header	Molecule	Title
c3wy7D_	PDB header: transferase	Chain: D: PDB Molecule: 8-amino-7-oxononanoate synthase;	PDBTitle: crystal structure of mycobacterium smegmatis 7-keto-8-aminopelargonic2 acid (kapa) synthase biof

Links to external resources
Added to library: Sat Dec 20 09:07:30 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L A D I E Q R R R A E G L R R E L R V R P P V A A E L D L A S N D Y L G L S Q H P D V L D G G V E A L R T W G G G A G G S R L V T G N T E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S
S
T T S
T T
S S
S S
S S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H E A F E H Q L A S F L G A E S A L V F S S G Y T A N L G A L V A L S G P G S L I V S D A L S H A S L V D A C R L S R A R V V V S P H R D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S
T T
G G G T T S S T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D A V D A A L A A R T E E R A V V V T E S V F S A D G D L A P L R D L H A V C R R H G A L L L V D E A H G L G V R G T R G Q G L L H E V G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S B
T T T
B
T T
T T T T T T S S T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A G A P D I V M T T T L S K A L G S Q G G A V L G P E A V R A H L I D T A R S F I F D T G L A P A A V G A A S A A L R V L D A E P Q R A R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S S T T
S
S S
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V L D R A A E L A T I A G V T E A P V S A V V S V I L G D P E I A V G A A A A C L D R G V R V G C F R P P T V P A G T S R L R L A A R A S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S S S S T T T T T
T T T S
G G G
T T

. . . . . . . . . 360 . . . . . . . . . 370 .

Sequence T D D E M A L A R Q V L T D V L A T A R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	A	D	I	E	Q	R	R	R	A	E	G	L	R	R	E	L	R	V	R	P	P	V	A	A	E	L	D	L	A	S	N	D	Y	L	G	L	S	Q	H	P	D	V	L	D	G	G	V	E	A	L	R	T	W	G	G	G	A	G	G	S	R	L	V	T	G	N	T	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T												T	T									S		S				S				T	T	S		T	T																	S	S		S	S			S	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	E	A	F	E	H	Q	L	A	S	F	L	G	A	E	S	A	L	V	F	S	S	G	Y	T	A	N	L	G	A	L	V	A	L	S	G	P	G	S	L	I	V	S	D	A	L	S	H	A	S	L	V	D	A	C	R	L	S	R	A	R	V	V	V	S	P	H	R	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		S						S	S													S		T	T							G	G	G	T	T	S	S								T	S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	A	V	D	A	A	L	A	A	R	T	E	E	R	A	V	V	V	T	E	S	V	F	S	A	D	G	D	L	A	P	L	R	D	L	H	A	V	C	R	R	H	G	A	L	L	L	V	D	E	A	H	G	L	G	V	R	G	T	R	G	Q	G	L	L	H	E	V	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S				S								S	B		T	T	T			B													T	T								T	T	T	T	T	T	S	S	T	T	S							T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	G	A	P	D	I	V	M	T	T	T	L	S	K	A	L	G	S	Q	G	G	A	V	L	G	P	E	A	V	R	A	H	L	I	D	T	A	R	S	F	I	F	D	T	G	L	A	P	A	A	V	G	A	A	S	A	A	L	R	V	L	D	A	E	P	Q	R	A	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		T	T							S	S	S	T	T		S																								S	S																						T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	L	D	R	A	A	E	L	A	T	I	A	G	V	T	E	A	P	V	S	A	V	V	S	V	I	L	G	D	P	E	I	A	V	G	A	A	A	A	C	L	D	R	G	V	R	V	G	C	F	R	P	P	T	V	P	A	G	T	S	R	L	R	L	A	A	R	A	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T			S			S	S	S								S	T	T	T											T	T								T	T	T	S		G	G	G									T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Sequence	T	D	D	E	M	A	L	A	R	Q	V	L	T	D	V	L	A	T	A	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T