PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3wuqA_

Fold library id	PDB Header	Molecule	Title
c3wuqA_	PDB header: motor protein	Chain: A: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;	PDBTitle: structure of the entire stalk region of the dynein motor domain

Links to external resources
Added to library: Sat Aug 9 08:40:59 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T V D Q V E E L R R D L R I K S Q E L E V K N A A A N D K L K K M V K D Q Q E A E K K K V M S Q E I Q E Q L H K Q Q E V I A D K Q M S V K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D L D K V E P A V I E A Q N A V K S I K K Q H L V E V R S M A N P P A A V K L A L E S I C L L L G E S T T D W K Q I R S I I M R E N F I P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T
S S
T T
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I V N F S A E E I S D A I R E K M K K N Y M S N P S Y N Y E I V N R A S L A C G P M V K W A I A Q L N Y A D M L K R V E P L R N E L Q K L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T T T S T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . .

Sequence D D A K D N Q Q K A N E V E Q M I R D L E A S I A R Y K E E Y A V L I S E A Q A I K A D L A A V E A K V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	V	D	Q	V	E	E	L	R	R	D	L	R	I	K	S	Q	E	L	E	V	K	N	A	A	A	N	D	K	L	K	K	M	V	K	D	Q	Q	E	A	E	K	K	K	V	M	S	Q	E	I	Q	E	Q	L	H	K	Q	Q	E	V	I	A	D	K	Q	M	S	V	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	L	D	K	V	E	P	A	V	I	E	A	Q	N	A	V	K	S	I	K	K	Q	H	L	V	E	V	R	S	M	A	N	P	P	A	A	V	K	L	A	L	E	S	I	C	L	L	L	G	E	S	T	T	D	W	K	Q	I	R	S	I	I	M	R	E	N	F	I	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S										T	T												T		S	S																T	T														S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	V	N	F	S	A	E	E	I	S	D	A	I	R	E	K	M	K	K	N	Y	M	S	N	P	S	Y	N	Y	E	I	V	N	R	A	S	L	A	C	G	P	M	V	K	W	A	I	A	Q	L	N	Y	A	D	M	L	K	R	V	E	P	L	R	N	E	L	Q	K	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G			T	T									T	T	T	S	T	T		S									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence	D	D	A	K	D	N	Q	Q	K	A	N	E	V	E	Q	M	I	R	D	L	E	A	S	I	A	R	Y	K	E	E	Y	A	V	L	I	S	E	A	Q	A	I	K	A	D	L	A	A	V	E	A	K	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)