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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3wszA_

Fold library idPDB HeaderMoleculeTitle
c3wszA_PDB header: protein bindingChain: A: PDB Molecule: sortilin-related receptor;PDBTitle: sorla vps10p domain in complex with abeta-derived peptide


Added to library: Sat Feb 7 08:45:19 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVALARDSLPKSSDVYVSYDYGKSFKKISDKLNFGLGNRSE
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S

SS









SSTTSS

GGGS


TT



 .........80.........90.........100.........110.........120.........130.........140
Sequence AVIAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQL
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SS
TT
SSSSSSTTSS

SS

S
SS
TT

TTSTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence WKSDDFGQTWIMIQEHVKSFSWGIDPYDKPNTIYIERHEPSGYSTVFRSTDFFQSRENQEVILEEVRDFQ
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Known secondary structure (DSSP) SSSSSS
SS

TTTS
TT

TTS
SSSSS
TTT


SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LRDKYMFATKVVHLLGSLWVSFGRKPMRAAQFVTRHPINEYYIADASEDQVFVCVSHSNNRTNLYISEKF
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Known secondary structure (DSSP) TT







TT

B

SS
TTTTS



B
 .........290.........300.........310.........320.........330.........340.........350
Sequence SLSLENVLYYSPGGAGSDTLVRYFANEPFADFHRVEGLQGVYIATLINGNMRSVITFDKGGTWEFLQAPA
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Known secondary structure (DSSP) SB

SSSTTTTSGGGGT
SS
S
TTSSS



SSSSS





S
 .........360.........370.........380.........390.........400.........410.........420
Sequence FTGKINCELSQGCSLHLAQRLSQLLNLQLRRMPILSKESAPGLIIATGSVGKNLASKTNVYISSSAGARW
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TTTT

TT
SS




TTSTT
SS

SS
SSTTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence REALPGPHYYTWGDHGGIITAIAQGMETNELKYSTNEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIF
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Known secondary structure (DSSP) SS
TTTTSSS
B
SSTTSS


SS
B

TT

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GSNKENVHSWLILQVNATDALGVPCTENDYKLWSPSDERGNECKTVFKRRTPHATCFNGEDFDRPVVVSN
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Known secondary structure (DSSP)
TTTT



SB

GGG
S
S



TT

SB

TT





 .
Sequence C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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