PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3wrnA_

Fold library id	PDB Header	Molecule	Title
c3wrnA_	PDB header: replication	Chain: A: PDB Molecule: non-capsid protein ns-1;	PDBTitle: minute virus of mice non-structural protein-1n-terminal nuclease2 domain reveals a unique zn2+ coordination in the active site pocket3 and shows a novel mode of dna recognition at the origin of4 replication

Links to external resources
Added to library: Sat Jan 24 08:15:07 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y S D E V L G A T N W L K E K S N Q E V F S F V F K N E N V Q L N G K D I G W N S Y K K E L Q E D E L K S L Q R G A E T T W D Q S E D M E W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E T T V D E M T K K Q V F I F D S L V K K C L F E V L N T K N I F P G D V N W F V Q H E W G K D Q G W H C H V L I G G K D F S Q A Q G K W W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T T T T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R R Q L N V Y W S R W L V T A C N V Q L T P A E R I K L R E I A E D N E W V T L L T Y K H K Q T K K D Y T K C V L F G N M I A Y Y F L T K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
B
S S S
B
T G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence K I S T S P P R D G G Y F L S S D S G W K T N F L K E G E R H L V S K L Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S S S
T T
T T S S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	S	D	E	V	L	G	A	T	N	W	L	K	E	K	S	N	Q	E	V	F	S	F	V	F	K	N	E	N	V	Q	L	N	G	K	D	I	G	W	N	S	Y	K	K	E	L	Q	E	D	E	L	K	S	L	Q	R	G	A	E	T	T	W	D	Q	S	E	D	M	E	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	T																T	T					T	T																												T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	T	T	V	D	E	M	T	K	K	Q	V	F	I	F	D	S	L	V	K	K	C	L	F	E	V	L	N	T	K	N	I	F	P	G	D	V	N	W	F	V	Q	H	E	W	G	K	D	Q	G	W	H	C	H	V	L	I	G	G	K	D	F	S	Q	A	Q	G	K	W	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														T	T			G	G	G											T	T	T											T	T			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	R	Q	L	N	V	Y	W	S	R	W	L	V	T	A	C	N	V	Q	L	T	P	A	E	R	I	K	L	R	E	I	A	E	D	N	E	W	V	T	L	L	T	Y	K	H	K	Q	T	K	K	D	Y	T	K	C	V	L	F	G	N	M	I	A	Y	Y	F	L	T	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S																	T	T	S					B					S	S	S				B												T	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	K	I	S	T	S	P	P	R	D	G	G	Y	F	L	S	S	D	S	G	W	K	T	N	F	L	K	E	G	E	R	H	L	V	S	K	L	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B			S	S	S			T	T								T	T	S	S	S	T	T