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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3wodF_

Fold library idPDB HeaderMoleculeTitle
c3wodF_PDB header: transferase/transcriptionChain: F: PDB Molecule: rna polymerase sigma factor;PDBTitle: rna polymerase-gp39 complex


Added to library: Sat Mar 15 08:26:15 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRH
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Known secondary structure (DSSP)

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 .........80.........90.........100.........110.........120.........130.........140
Sequence IPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLI
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Known secondary structure (DSSP)
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S
GGGGGGTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQAQEPVSLETPIGDEKDSFYGDFIPDEHLP
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Known secondary structure (DSSP)

TTSSS






S



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SS
 .........220.........230.........240.........250.........260.........270........
Sequence SPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGEEVGAFFGVTRERIRQIENKALRKLKYHE
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Known secondary structure (DSSP)

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TTTSSSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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