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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3w5mA_

Fold library idPDB HeaderMoleculeTitle
c3w5mA_PDB header: hydrolaseChain: A: PDB Molecule: putative rhamnosidase;PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase


Added to library: Sat Mar 23 08:35:02 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALRVTSPSVEYVQRPLGLDAAHPRLSWPMASAAPGRRQSAYQVRVASSAAGLSHPDVWDSGKVVSDDSVL
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Known secondary structure (DSSP)


S
TTBSS


SS



SSSS

SSSGGGGS
SS






SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VPYAGPPLKPRTRYFWSVRVWDADGGASEWSAPSWWETGLMGASQWSAKWISAPAPLTEAPSLEGSSWIW
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Known secondary structure (DSSP)

SS


TT
SSS
B








SGGG






S



TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FPEGEPANSAPAATRWFRRTVDLPDDITGATLAISADNVYAVSVDGAEVARTDLEADNEGWRRPAVIDVL
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Known secondary structure (DSSP)
SSSBTTTBB
S

SS

STT

TTT
SSGGGS

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence DHVHSGNNTLAVSASNASVGPAGWICVLVLTTASGEKKIFSDASWKSTDHEPADGWREPDFDDSGWPAAK
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Known secondary structure (DSSP) TT

S
SSSB

TTSSTTSSS


TTTTSTT


TTS
B
 .........290.........300.........310.........320.........330.........340.........350
Sequence VAAAWGAGPWGRVAPVASAANQLRHEFRLPHKKVSRARLYATALGLYEAHLNGRRVGRDQLAPGWTDYRK
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Known secondary structure (DSSP) TT
TTT
S








SS
STT
SS
SSBT



TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RVQYQTYDVTSSVRPGANALAAYVAPGWYAGNVGMFGPHQYGERPALLAQLEVEYADGTSERITSGPDWR
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Known secondary structure (DSSP)
TTT

S
S

TTS
S
SS
SS
TTS

STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AASGPIVSADLLSGETYDARKETAGWTSPGFDDRAWLAVRGADNDVPEQIVAQVDGPVRIAKELPARKVT
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Known secondary structure (DSSP)

STTTGGG

TTTTSTT


TTS


S


S

S



 .........500.........510.........520.........530.........540.........550.........560
Sequence EPKPGVFVLDLGQNMVGSVRLRVSGDAGTTVRLRHAEVLNPDGTIYTANLRSAAATDTYTLKGQGEETYE
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Known secondary structure (DSSP) TT


TT
S
TTS

GGGTT






SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence PRFTFHGFRYVEVTGFPGKPSTTSVTGRVMHTSAPFTFEFETNVPMLNKLHSNITWGQRGNFLSVPTDTP
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Known secondary structure (DSSP)
SS

S
SS


GGGS

B
S
TBSSSB
S
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence ARDERLGWTGDINVFAPTAAYTMESARFLTKWLVDLRDAQTSDGAFTDVAPAVGNLGNGVAGWGDAGVTV
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Known secondary structure (DSSP) SSS



BB



TTS

BSBSS

TT

B

TTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence PWALYQAYGDRQVLADALPSVHAWLRYLEKHSDGLLRPADGYGDWLNVSDETPKDVIATAYFAHSADLAA
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Known secondary structure (DSSP)

TSBTTB

S
S

STT
SS



 .........780.........790.........800.........810.........820.........830.........840
Sequence RMATELGKDAAPYTDLFTRIRKAFQTAYVASDGKVKGDTQSAYVLTLSMNLVPDALRKAAADRLVALIEA
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Known secondary structure (DSSP) TT


B
TTS
BTT

TT
S
GGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence KDWHLSTGFLGTPRLLPVLTDTGHTDVAYRLLHQRTFPSWGYPIDKGSTTMWERWDSIQPDGGFQTPEMN
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Known secondary structure (DSSP) TTS




TTTTT


SSSSSTT
SS

SSTTSB
TTS
B

TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence SFNHYAYGSVGEWMYANIAGIAPGRAGYRQVVIRPRPGGEVTSARATFASLHGPVSTRWQQRSGGFVLTC
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Known secondary structure (DSSP)
S

SGGGGGTS

GGGT



BTTB
TTTT
 .........990.........1000.........1010.........1020.........1030
Sequence SVPPNTTAEVWIPADHPDRVQHTHGTFVRAEDGCAVFEVGSGSHRFTVKL
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Known secondary structure (DSSP)
TT

SSGGG
SSSTT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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