PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3w3aO_

Fold library id	PDB Header	Molecule	Title
c3w3aO_	PDB header: hydrolase	Chain: O: PDB Molecule: v-type atp synthase subunit d;	PDBTitle: crystal structure of v1-atpase at 3.9 angstrom resolution

Links to external resources
Added to library: Sat May 25 08:36:54 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Q V S P T R M N L L Q R R G Q L R L A Q K G V D L L K K K R D A L V A E F F G L V R E A M E A R K A L D Q A A K E A Y A A L L L A Q A F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T T T T T T T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G P E V V A G A A L G V P P L E G V E A E V E N V W G S K V P R L K A T F P D G A L L S P V G T P A Y T L E A S R A F R R Y A E A L I R V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S S
S S
S
B T T B
T T T T T
S
S G G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N T E T R L K K I G E E I K K T T R R V N A L E Q V V I P G I R A Q I R F I Q Q V L E Q R E R E D T F R L K R I K G K I E A R E A E E E G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Q	V	S	P	T	R	M	N	L	L	Q	R	R	G	Q	L	R	L	A	Q	K	G	V	D	L	L	K	K	K	R	D	A	L	V	A	E	F	F	G	L	V	R	E	A	M	E	A	R	K	A	L	D	Q	A	A	K	E	A	Y	A	A	L	L	L	A	Q	A	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S					T	T																																								T	T						T	T	T	T	T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	P	E	V	V	A	G	A	A	L	G	V	P	P	L	E	G	V	E	A	E	V	E	N	V	W	G	S	K	V	P	R	L	K	A	T	F	P	D	G	A	L	L	S	P	V	G	T	P	A	Y	T	L	E	A	S	R	A	F	R	R	Y	A	E	A	L	I	R	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	S	S	S			S	S		S							B	T	T	B										T	T	T	T	T				S				S								G	G	G	G	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	T	E	T	R	L	K	K	I	G	E	E	I	K	K	T	T	R	R	V	N	A	L	E	Q	V	V	I	P	G	I	R	A	Q	I	R	F	I	Q	Q	V	L	E	Q	R	E	R	E	D	T	F	R	L	K	R	I	K	G	K	I	E	A	R	E	A	E	E	E	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																								T																			T	T																				S	S	S