PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3w1vA_

Fold library id	PDB Header	Molecule	Title
c3w1vA_	PDB header: lyase	Chain: A: PDB Molecule: capsular polysaccharide synthesis enzyme cap8e;	PDBTitle: crystal structure of capsular polysaccharide synthesizing enzyme cape2 from staphylococcus aureus in complex with inihibitor

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Added to library: Sat Jun 15 09:16:54 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G L V P R G S A M G F D D K I L L I T G G T G S F G N A V M K R F L D S N I K E I R I F S R D E K K Q D D I R K K Y N N S K L K F Y I G D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
T T T S S S
S S
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R D S Q S V E T A M R D V D Y V F H A A A L K Q V P S C E F F P V E A V K T N I I G T E N V L Q S A I H Q N V K K V I C L S T D K A A Y P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T T
S G G G S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N A M G I S K A M M E K V F V A K S R N I R S E Q T L I C G T R Y G N V M A S R G S V I P L F I D K I K A G E P L T I T D P D M T R F L M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S
T T T
T T
T T S T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L E D A V E L V V H A F K H A E T G D I M V Q K A P S S T V G D L A T A L L E L F E A D N A I E I I G T R H G E K K A E T L L T R E E Y A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
S B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . .

Sequence C E D M G D Y F R V P A D S R D L N Y S N Y V E T G N E K I T Q S Y E Y N S D N T H I L T V E E I K E K L L T L E Y V R N E L N D Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T
T
T T T S
B
T

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	L	V	P	R	G	S	A	M	G	F	D	D	K	I	L	L	I	T	G	G	T	G	S	F	G	N	A	V	M	K	R	F	L	D	S	N	I	K	E	I	R	I	F	S	R	D	E	K	K	Q	D	D	I	R	K	K	Y	N	N	S	K	L	K	F	Y	I	G	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		T	T						T	T							T	T	T	S												S	S			S							S															T	T								T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	D	S	Q	S	V	E	T	A	M	R	D	V	D	Y	V	F	H	A	A	A	L	K	Q	V	P	S	C	E	F	F	P	V	E	A	V	K	T	N	I	I	G	T	E	N	V	L	Q	S	A	I	H	Q	N	V	K	K	V	I	C	L	S	T	D	K	A	A	Y	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										T	T																												T													T	T		S								G	G	G	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	A	M	G	I	S	K	A	M	M	E	K	V	F	V	A	K	S	R	N	I	R	S	E	Q	T	L	I	C	G	T	R	Y	G	N	V	M	A	S	R	G	S	V	I	P	L	F	I	D	K	I	K	A	G	E	P	L	T	I	T	D	P	D	M	T	R	F	L	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																		T	T	S		T	T	T												T	T		T	T	S											T	T						S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	E	D	A	V	E	L	V	V	H	A	F	K	H	A	E	T	G	D	I	M	V	Q	K	A	P	S	S	T	V	G	D	L	A	T	A	L	L	E	L	F	E	A	D	N	A	I	E	I	I	G	T	R	H	G	E	K	K	A	E	T	L	L	T	R	E	E	Y	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T																							T	T												T	T			S	B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Sequence	C	E	D	M	G	D	Y	F	R	V	P	A	D	S	R	D	L	N	Y	S	N	Y	V	E	T	G	N	E	K	I	T	Q	S	Y	E	Y	N	S	D	N	T	H	I	L	T	V	E	E	I	K	E	K	L	L	T	L	E	Y	V	R	N	E	L	N	D	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S							S		T	T								T								T						T	T	T	S		B												T