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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vzdB_

Fold library idPDB HeaderMoleculeTitle
c3vzdB_PDB header: transferase/inhibitorChain: B: PDB Molecule: sphingosine kinase 1;PDBTitle: crystal structure of sphingosine kinase 1 with inhibitor and adp


Added to library: Sat May 4 08:44:17 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVM
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Known secondary structure (DSSP)
B

SS
SSTTTS
TT

STT

GGG
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLS
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Known secondary structure (DSSP)
TSTTTTS

SS

TT




TB
 .........150.........160.........170.........180.........190.........200.........210
Sequence PMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLPVGRG
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Known secondary structure (DSSP) TTS
SSGGGGGGGGGT


B
S


 .........220.........230.........240.........250.........260.........270.........280
Sequence PVDAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRL
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Known secondary structure (DSSP)


TT


TTS


TTS
S


SSS
SBTTB


TT
S

TT
TT

 .........290.........300.........310.........320.........330.........340..
Sequence FLAMEKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSG
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Known secondary structure (DSSP) TTT
GGGS

TTSSS
TTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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